Factsheet for GSMUA_Achr5P22560_001

Subcellular Localization

min:

: max

Winner_takes_all: cytosol

Predictor Summary:

plastid 2
cytosol 4
mitochondrion 2

Predictors

GFP

MS/MS

Papers

PPI

No PPI Data

Homology

Paralog

locus	Identity	Homology Identity

Ortholog

locus	Homology Species	Location	Identity	Homology Identity
HORVU7Hr1G091190.1	Barley	cytosol	25.61	53.85
HORVU6Hr1G022460.1	Barley	cytosol	25.61	52.5
HORVU6Hr1G050840.1	Barley	cytosol	24.39	50.0
KRH66387	Soybean	peroxisome	26.83	33.85
KRG88565	Soybean	cytosol	29.27	26.97
GSMUA_Achr8P30490_001	Banana	cytosol, unclear	68.29	18.36
GSMUA_AchrUn_...	Banana	cytosol, plasma membrane	60.98	16.95
Os03t0182600-02	Rice	cytosol, plasma membrane, plastid	59.76	16.07
TraesCS4A01G006000.1	Wheat	cytosol	58.54	16.0
VIT_09s0002g00610.t01	Wine grape	cytosol	59.76	15.71
TraesCS4B01G299100.1	Wheat	cytosol, extracellular, golgi, nucleus, unclear	58.54	15.58
TraesCS4D01G298000.1	Wheat	cytosol	58.54	15.58
Zm00001d027919_P001	Maize	plastid	57.32	15.16
Zm00001d048256_P002	Maize	plasma membrane	56.1	14.94
Zm00001d048253_P001	Maize	plastid	56.1	14.94
Solyc06g072120.2.1	Tomato	nucleus	53.66	14.86
Zm00001d048346_P001	Maize	plastid	56.1	14.84
CDY46144	Canola	cytosol	52.44	14.73
CDY20307	Canola	cytosol	52.44	14.73
Bra032101.1-P	Field mustard	cytosol	52.44	14.73
PGSC0003DMT400069333	Potato	cytosol, mitochondrion	53.66	14.72
CDY03641	Canola	cytosol	52.44	14.58
CDX82152	Canola	cytosol	52.44	14.53
Bra008030.1-P	Field mustard	cytosol	52.44	14.53
CDY50642	Canola	cytosol	50.0	14.24
CDX68268	Canola	cytosol, extracellular	50.0	14.24
Bra003882.1-P	Field mustard	cytosol	50.0	14.24
Bra016062.1-P	Field mustard	cytosol	40.24	13.87
GSMUA_Achr1P21820_001	Banana	cytosol	50.0	13.76
AT1G72370.1	Thale cress	cytosol	50.0	13.76
CDX96403	Canola	cytosol	48.78	13.7
CDX72910	Canola	cytosol	48.78	13.7
AT3G04770.1	Thale cress	cytosol	54.88	13.55
Solyc03g019780.2.1	Tomato	nucleus	48.78	13.42
PGSC0003DMT400039497	Potato	cytosol	48.78	13.33
Zm00001d027527_P001	Maize	mitochondrion	54.88	11.9
HORVU4Hr1G077240.1	Barley	cytosol	57.32	11.78
CDY55242	Canola	cytosol	28.05	9.31
GSMUA_AchrUn_...	Banana	vacuole	29.27	7.06
CDY42439	Canola	cytosol	20.73	6.51

Protein Annotations

MapMan:17.1.3.1.1	Gene3D:3.40.50.10490	GO:GO:0003674	GO:GO:0003735	GO:GO:0005198	GO:GO:0005575
GO:GO:0005622	GO:GO:0005623	GO:GO:0005737	GO:GO:0005840	GO:GO:0006412	GO:GO:0008150
GO:GO:0008152	GO:GO:0009058	GO:GO:0009987	GO:GO:0015935	GO:GO:0019538	EnsemblPlantsGene:GSMUA_Achr5G22560_001
EnsemblPlants:GSMUA_Achr5P22560_001	EnsemblPlants:GSMUA_Achr5T22560_001	UniProt:M0T0T1	PRINTS:PR00395	ScanProsite:PS00962	PANTHER:PTHR11489
PANTHER:PTHR11489:SF15	InterPro:Ribosomal_S2	InterPro:Ribosomal_S2_CS	InterPro:Ribosomal_S2_euk/arc	InterPro:Ribosomal_S2_flav_dom_sf	SUPFAM:SSF52313
UniParc:UPI000294C879	:	:	:	:	:

Description

Hypothetical protein [Source:GMGC_GENE;Acc:GSMUA_Achr5G22560_001]

Coordinates

chr5:-:24571486..24572231

Molecular Weight (calculated)

9532.9 Da

IEP (calculated)

9.690

GRAVY (calculated)

-0.074

Length

82 amino acids

Sequence
(BLAST)

1: MAATRVLSPN EQDIQMMLAA NVHIGARNCN FQMERYVYRR RPDGVFLINL GKTWENLQLV LPLKTHKISL FGLPDVMIKE LY

Best Arabidopsis Sequence Match ( AT3G04770.2 )
(BLAST)

001: MAANGVATAG RQVSEKEADI QMMLSADVHL GTKNCNYQME RYVFKRRDDG IYIINLGKTW DKLQMAARVI VAIENPKDII VQSARPYGQR AVLKFAQYTG
101: VNAIAGRHTP GTFTNQMQTS FSEPRLLILT DPRTDHQPIK EGALGNIPTI AFCDTDSPMG FVDIGIPANN KGKHSIGCLF WLLARMVLQM RGTILAAQKW
201: DVMVDLFFYR EPEEAKQEGD EEAEVQADYG MVGGDQWTTA QISDAAWSGE VEQPISAAPA VGVTVAAGWE AASVPAAGWE

Arabidopsis Description

RPSAb40S ribosomal protein SA [Source:UniProtKB/TrEMBL;Acc:F4J4W3]
SUBAcon: [cytosol]

Hydropathy Plot

About CropPAL

The Protein Annotated Locations Database (CropPAL) houses large scale proteomic and GFP localization data from published experimental studies in Soybean (Glycine max), Maize (Zea mays), Wheat (Triticum aestivum), Barley (Hordeum vulgare), Rice (Oryza sativa), Field mustard (Brassica rapa), Canola (Brassica napus), Sorghum (Sorghum bicolor), Potato (Solanum tuberosum), Tomato (Solanum lycopersicum), Banana (Musa acuminata) and Wine grape (Vitis vinifera) as well as precomputed predictions for protein subcellular localizations using protein sequences.