Factsheet for Zm00001d027527_P001

Subcellular Localization

min:

: max

Winner_takes_all: mitochondrion

Predictor Summary:

plastid 1
mitochondrion 5
cytosol 2

Predictors

GFP

MS/MS

Papers

PPI

No PPI Data

Homology

Paralog

locus	Identity	Homology Identity

Ortholog

locus	Homology Species	Location	Identity	Homology Identity
Zm00001d048256_P002	Maize	plasma membrane	78.04	95.78
Zm00001d027919_P001	Maize	plastid	76.98	93.87
Zm00001d048253_P001	Maize	plastid	75.93	93.18
Zm00001d048346_P001	Maize	plastid	74.87	91.29
Os03t0182600-02	Rice	cytosol, plasma membrane, plastid	69.05	85.57
TraesCS4D01G298000.1	Wheat	cytosol	68.25	83.77
TraesCS4B01G299100.1	Wheat	cytosol, extracellular, golgi, nucleus, unclear	68.25	83.77
TraesCS4A01G006000.1	Wheat	cytosol	64.29	81.0
Zm00001d006871_P001	Maize	cytosol, extracellular, plastid	62.17	76.55
Solyc06g072120.2.1	Tomato	nucleus	57.94	73.99
Solyc03g019780.2.1	Tomato	nucleus	56.88	72.15
CDY55242	Canola	cytosol	46.56	71.26
VIT_09s0002g00610.t01	Wine grape	cytosol	58.73	71.15
PGSC0003DMT400069333	Potato	cytosol, mitochondrion	56.08	70.9
CDY46144	Canola	cytosol	54.23	70.21
Bra032101.1-P	Field mustard	cytosol	54.23	70.21
CDY03641	Canola	cytosol	54.76	70.17
CDY20307	Canola	cytosol	53.97	69.86
CDX68268	Canola	cytosol, extracellular	53.17	69.79
CDY50642	Canola	cytosol	53.17	69.79
PGSC0003DMT400039497	Potato	cytosol	55.29	69.67
Bra008030.1-P	Field mustard	cytosol	54.5	69.59
CDX82152	Canola	cytosol	54.5	69.59
Bra003882.1-P	Field mustard	cytosol	52.65	69.1
CDX72910	Canola	cytosol	53.17	68.84
CDX96403	Canola	cytosol	52.91	68.49
AT1G72370.1	Thale cress	cytosol	53.7	68.12
HORVU4Hr1G077240.1	Barley	cytosol	68.78	65.16
Bra016062.1-P	Field mustard	cytosol	40.21	63.87
GSMUA_Achr5P22560_001	Banana	cytosol	11.9	54.88
AT3G04770.1	Thale cress	cytosol	47.62	54.22
CDY42439	Canola	cytosol	35.45	51.34
KRH66387	Soybean	peroxisome	8.2	47.69
KRG88565	Soybean	cytosol	10.85	46.07

Protein Annotations

MapMan:17.1.3.1.1	Gene3D:3.40.50.10490	UniProt:A0A1D6JMV2	GO:GO:0000028	GO:GO:0003674	GO:GO:0003735
GO:GO:0005198	GO:GO:0005575	GO:GO:0005622	GO:GO:0005623	GO:GO:0005737	GO:GO:0005829
GO:GO:0005840	GO:GO:0006412	GO:GO:0008150	GO:GO:0008152	GO:GO:0009058	GO:GO:0009987
GO:GO:0015935	GO:GO:0016043	GO:GO:0019538	GO:GO:0022627	GO:GO:0030529	HAMAP:MF_03015
ProteinID:ONL93374.1	ProteinID:ONL93375.1	PFAM:PF00318	PRINTS:PR00395	ScanProsite:PS00963	PANTHER:PTHR11489
PANTHER:PTHR11489:SF15	InterPro:Ribosomal_S2	InterPro:Ribosomal_S2_CS	InterPro:Ribosomal_S2_euk	InterPro:Ribosomal_S2_euk/arc	InterPro:Ribosomal_S2_flav_dom_sf
SUPFAM:SSF52313	TIGRFAMs:TIGR01012	UniParc:UPI000221C37D	EnsemblPlantsGene:Zm00001d027527	EnsemblPlants:Zm00001d027527_P001	EnsemblPlants:Zm00001d027527_T001
SEG:seg	:	:	:	:	:

Description

40S ribosomal protein Sa-1

Coordinates

chr1:-:7457235..7459538

Molecular Weight (calculated)

41318.9 Da

IEP (calculated)

6.630

GRAVY (calculated)

-0.356

Length

378 amino acids

Sequence
(BLAST)

001: MFLQRPNAHL HVRLPRVLDA SQIKSSLPNY NLPQRRRSQT PSPTAQPRSG DPSLSFPSFC RPRSLAFPST MAAAAGGGAV RALSQKEQDI QMMLAADVHL
101: GTKNCDFQTE RYVFKRRTDG IYIINLGKTW DKLQLAARVI VAIENPQDII VQSARPYGQR AVLKFAQYTG AHAIAGRHTP GTFTNQLQTS FSEPRLLILT
201: DPRTDHQPIK ESALGNIPTI AFCDTDSPMR YVDIGIPANN KGRNSIGCLF WLLSRMVLQM RGTILPGHKW EVMVDLFFYR DPEEAKEQEE EVAAAPEFAA
301: ITDYQGADQW GGDQWTSDVA APPVAPTGAD WGAAPAPVPT GEGWDQAGAP VPADGTVPPV VAPTGWDQAA PPTAQGWE

Best Arabidopsis Sequence Match ( AT1G72370.1 )
(BLAST)

001: MATNGSASSA QLSQKEADVR MMCAAEVHLG TKNCNYQMER YVFKRRNDGI YIFNLGKTWE KLQMAARVIV AIENPQDIIV QSARPYGQRA VLKFAQYTGA
101: NAIAGRHTPG TFTNQMQTSF SEPRLLILTD PRTDHQPIKE GALGNIPIIA FCDTDSPMRF VDIGIPANNK GKHSIGCLFW LLARMVLQMR GTIAAGQKWD
201: VMVDLFFYRE PEETKPEDED EAGPQAEYGA LPAPEYGMVG GDQWTTAQIP DAAWPGEGQA PISAAPAAAS WSDSAAAPAD GGWEAAAPPS GAPAAGWE

Arabidopsis Description

RPSAA40S ribosomal protein SA [Source:UniProtKB/TrEMBL;Acc:A0A178WNA1]
SUBAcon: [cytosol]

Hydropathy Plot

About CropPAL

The Protein Annotated Locations Database (CropPAL) houses large scale proteomic and GFP localization data from published experimental studies in Soybean (Glycine max), Maize (Zea mays), Wheat (Triticum aestivum), Barley (Hordeum vulgare), Rice (Oryza sativa), Field mustard (Brassica rapa), Canola (Brassica napus), Sorghum (Sorghum bicolor), Potato (Solanum tuberosum), Tomato (Solanum lycopersicum), Banana (Musa acuminata) and Wine grape (Vitis vinifera) as well as precomputed predictions for protein subcellular localizations using protein sequences.