Factsheet for HORVU4Hr1G077240.1

Subcellular Localization

min:

: max

Winner_takes_all: cytosol

Predictor Summary:

cytosol 2

Predictors

GFP

MS/MS

Papers

Winner Takes All:	cytosol
Any Predictor:	cytosol
MultiLoc:	cytosol
YLoc:	cytosol

PPI

No PPI Data

Homology

Paralog

locus	Identity	Homology Identity

Ortholog

locus	Homology Species	Location	Identity	Homology Identity
TraesCS4B01G299100.1	Wheat	cytosol, extracellular, golgi, nucleus, unclear	73.18	94.81
TraesCS4D01G298000.1	Wheat	cytosol	73.18	94.81
HORVU6Hr1G022460.1	Barley	cytosol	8.77	87.5
TraesCS4A01G006000.1	Wheat	cytosol	65.66	87.33
HORVU7Hr1G091190.1	Barley	cytosol	8.52	87.18
HORVU6Hr1G050840.1	Barley	cytosol	8.52	85.0
Os03t0182600-02	Rice	cytosol, plasma membrane, plastid	62.91	82.3
Zm00001d027919_P001	Maize	plastid	63.66	81.94
Zm00001d048346_P001	Maize	plastid	63.66	81.94
Zm00001d048253_P001	Maize	plastid	63.16	81.82
Zm00001d048256_P002	Maize	plasma membrane	63.16	81.82
HORVU6Hr1G031720.2	Barley	cytosol	16.04	81.01
Zm00001d027527_P001	Maize	mitochondrion	65.16	68.78
GSMUA_Achr5P22560_001	Banana	cytosol	11.78	57.32
KRH66387	Soybean	peroxisome	7.52	46.15
KRG88565	Soybean	cytosol	9.77	43.82

Protein Annotations

MapMan:17.1.3.1.1	Gene3D:3.40.50.10490	UniProt:A0A287PQY8	GO:GO:0000028	GO:GO:0003674	GO:GO:0003735
GO:GO:0005198	GO:GO:0005575	GO:GO:0005622	GO:GO:0005623	GO:GO:0005737	GO:GO:0005829
GO:GO:0005840	GO:GO:0006412	GO:GO:0008150	GO:GO:0008152	GO:GO:0009058	GO:GO:0009987
GO:GO:0015935	GO:GO:0016043	GO:GO:0019538	GO:GO:0022627	EnsemblPlantsGene:HORVU4Hr1G077240	EnsemblPlants:HORVU4Hr1G077240.1
HAMAP:MF_03015	PFAM:PF00318	PRINTS:PR00395	ScanProsite:PS00963	PANTHER:PTHR11489	PANTHER:PTHR11489:SF15
InterPro:Ribosomal_S2	InterPro:Ribosomal_S2_CS	InterPro:Ribosomal_S2_euk	InterPro:Ribosomal_S2_euk/arc	InterPro:Ribosomal_S2_flav_dom_sf	SUPFAM:SSF52313
TIGRFAMs:TIGR01012	UniParc:UPI000B46BD1B	SEG:seg	:	:	:

Description

40S ribosomal protein SA [Source:UniProtKB/TrEMBL;Acc:A0A287PQY8]

Coordinates

chrchr4H:-:603597180..603599447

Molecular Weight (calculated)

43281.6 Da

IEP (calculated)

7.988

GRAVY (calculated)

-0.369

Length

399 amino acids

Sequence
(BLAST)

001: KNRRLDEKIN KFVREKKAGH MYCHLGRSIN YGGPRSTVIR SHYKSRLGFI GAPDKSPLPL PSSLLAPPLP PLPSLLSFPA PPRRSSPRPT MAAAAGEAPR
101: ALSQKEQDVQ MMLAADVHLG TKNCDFQMER YAYKRRSDGI YIINLGKTWE KLQLAARVIV AIENPQDIIV QSARPYGQRA VLKFAQHTGA NAIAGRHTPG
201: TFTNQMQTSF SEPRLLILTD PRTDHQPIKE SALGNIPTIA FCDTDSPMRY VDIGIPANNK GRNSIGCLYW LLARMVLQMR GTILPGHKWD VMVDLFFYRD
301: PEEAKEQEDE AAGAPEYTAI TDYAAAAGQW GGDQWTADAP APPPVTGGEW PMAEAPVAGG DGGWDAAGAP VAVEGGVAPP VAAATGWEAG VQPAAQGWE

Best Arabidopsis Sequence Match ( AT3G04770.2 )
(BLAST)

001: MAANGVATAG RQVSEKEADI QMMLSADVHL GTKNCNYQME RYVFKRRDDG IYIINLGKTW DKLQMAARVI VAIENPKDII VQSARPYGQR AVLKFAQYTG
101: VNAIAGRHTP GTFTNQMQTS FSEPRLLILT DPRTDHQPIK EGALGNIPTI AFCDTDSPMG FVDIGIPANN KGKHSIGCLF WLLARMVLQM RGTILAAQKW
201: DVMVDLFFYR EPEEAKQEGD EEAEVQADYG MVGGDQWTTA QISDAAWSGE VEQPISAAPA VGVTVAAGWE AASVPAAGWE

Arabidopsis Description

RPSAb40S ribosomal protein SA [Source:UniProtKB/TrEMBL;Acc:F4J4W3]
SUBAcon: [cytosol]

Hydropathy Plot

About CropPAL

The Protein Annotated Locations Database (CropPAL) houses large scale proteomic and GFP localization data from published experimental studies in Soybean (Glycine max), Maize (Zea mays), Wheat (Triticum aestivum), Barley (Hordeum vulgare), Rice (Oryza sativa), Field mustard (Brassica rapa), Canola (Brassica napus), Sorghum (Sorghum bicolor), Potato (Solanum tuberosum), Tomato (Solanum lycopersicum), Banana (Musa acuminata) and Wine grape (Vitis vinifera) as well as precomputed predictions for protein subcellular localizations using protein sequences.