Factsheet for Os03t0182600-02

Subcellular Localization

min:

: max

Winner_takes_all: plasma membrane, plastid, cytosol

Predictor Summary:

nucleus 1
cytosol 5
plastid 1
mitochondrion 1

Predictors

GFP

MS/MS

Papers

plasma membrane: 18260611
plastid: 27992503

msms PMID: 27992503 doi

S Xing, X Meng, L Zhou, H Mujahid, C Zhao, Y Zhang, C Wang, Z Peng

Department of Biochemistry, Molecular Biology, Entomology and Plant Pathology, Mississippi State University, Starkville, Mississippi, United States of America., Institute of Food Crops, Jiangsu Academy of Agricultural Sciences, Jiangsu High Quality Rice Research and Development Center, Nanjing Branch of China National Center for Rice Improvement, Nanjing, Jiangsu, China.

msms PMID: 18260611 doi

SH Natera, KL Ford, AM Cassin, JH Patterson, EJ Newbigin, A Bacic

Plant Cell Biology Research Centre, VIC, Australia. s.natera@unimelb.edu.au

PPI

No PPI Data

Homology

Paralog

locus	Identity	Homology Identity

Ortholog

locus	Homology Species	Location	Identity	Homology Identity
Zm00001d048253_P001	Maize	plastid	86.23	85.39
Zm00001d027919_P001	Maize	plastid	85.25	83.87
Zm00001d048256_P002	Maize	plasma membrane	84.59	83.77
TraesCS4B01G299100.1	Wheat	cytosol, extracellular, golgi, nucleus, unclear	84.26	83.44
TraesCS4D01G298000.1	Wheat	cytosol	84.26	83.44
Zm00001d048346_P001	Maize	plastid	82.62	81.29
TraesCS4A01G006000.1	Wheat	cytosol	79.34	80.67
Os07t0616600-02	Rice	nucleus	77.7	77.7
Os03t0402400-00	Rice	nucleus	42.95	70.43
Zm00001d027527_P001	Maize	mitochondrion	85.57	69.05
HORVU4Hr1G077240.1	Barley	cytosol	82.3	62.91
GSMUA_Achr5P22560_001	Banana	cytosol	16.07	59.76
KRH66387	Soybean	peroxisome	9.51	44.62
KRG88565	Soybean	cytosol	12.46	42.7

Protein Annotations

MapMan:17.1.3.1.1	Gene3D:3.40.50.10490	EntrezGene:9272225	ProteinID:AAK92638.1	ProteinID:ABF94325.1	EMBL:AK070905
EMBL:AK104286	EMBL:AK104620	EMBL:AK104842	ProteinID:BAS82637.1	ProteinID:EAZ25828.1	EMBL:EU847003
GO:GO:0000028	GO:GO:0000447	GO:GO:0000461	GO:GO:0003674	GO:GO:0003735	GO:GO:0005198
GO:GO:0005575	GO:GO:0005622	GO:GO:0005623	GO:GO:0005737	GO:GO:0005829	GO:GO:0005840
GO:GO:0006139	GO:GO:0006407	GO:GO:0006412	GO:GO:0006810	GO:GO:0008150	GO:GO:0008152
GO:GO:0009058	GO:GO:0009987	GO:GO:0015935	GO:GO:0016043	GO:GO:0019538	GO:GO:0022627
GO:GO:0030686	EMBL:HQ324810	HAMAP:MF_03015	EnsemblPlantsGene:Os03g0182600	EnsemblPlants:Os03t0182600-02	PFAM:PF00318
PRINTS:PR00395	ScanProsite:PS00963	PANTHER:PTHR11489	PANTHER:PTHR11489:SF15	UniProt:Q10QU9	InterPro:Ribosomal_S2
InterPro:Ribosomal_S2_CS	InterPro:Ribosomal_S2_euk	InterPro:Ribosomal_S2_euk/arc	InterPro:Ribosomal_S2_flav_dom_sf	SUPFAM:SSF52313	TIGRFAMs:TIGR01012
UniParc:UPI000009CDF3	RefSeq:XP_015630616.1	SEG:seg	:	:	:

Description

Ribosomal protein S2 family protein. (Os03t0182600-01);Similar to 40S ribosomal protein SA. (Os03t0182600-02);Similar to 40S ribosomal protein SA. (Os03t0182600-03)

Coordinates

chr3:-:4336742..4338899

Molecular Weight (calculated)

33145.1 Da

IEP (calculated)

4.609

GRAVY (calculated)

-0.217

Length

305 amino acids

Sequence
(BLAST)

001: MAAVAGGAAR ALSQAEQDVQ MMLAADVHLG TKNCDFQMER YVYKRRSDGI YIINLGKTWE KLQLAARVIV AIENPQDIIV QSARPYGQRA VLKFAQYTGA
101: HAIAGRHTPG TFTNQLQTSF SEPRLLILTD PRTDHQPIKE SALGNIPTIA FCDTDSPMRY VDIGIPANNK GRNSIGCLFW LLARMVLQMR GTILPGHKWD
201: VMVDLFFYRD PEEAKEQEEE APAQDFAAIT DYTAPEQWSA DQWTSDVAAP PAATVGDWGA APAPVAAAEG WDQAGAPVAT EAAVVPPVAP TGWDPAAQPA
301: AQGWD

Best Arabidopsis Sequence Match ( AT3G04770.2 )
(BLAST)

001: MAANGVATAG RQVSEKEADI QMMLSADVHL GTKNCNYQME RYVFKRRDDG IYIINLGKTW DKLQMAARVI VAIENPKDII VQSARPYGQR AVLKFAQYTG
101: VNAIAGRHTP GTFTNQMQTS FSEPRLLILT DPRTDHQPIK EGALGNIPTI AFCDTDSPMG FVDIGIPANN KGKHSIGCLF WLLARMVLQM RGTILAAQKW
201: DVMVDLFFYR EPEEAKQEGD EEAEVQADYG MVGGDQWTTA QISDAAWSGE VEQPISAAPA VGVTVAAGWE AASVPAAGWE

Arabidopsis Description

RPSAb40S ribosomal protein SA [Source:UniProtKB/TrEMBL;Acc:F4J4W3]
SUBAcon: [cytosol]

Hydropathy Plot

About CropPAL

The Protein Annotated Locations Database (CropPAL) houses large scale proteomic and GFP localization data from published experimental studies in Soybean (Glycine max), Maize (Zea mays), Wheat (Triticum aestivum), Barley (Hordeum vulgare), Rice (Oryza sativa), Field mustard (Brassica rapa), Canola (Brassica napus), Sorghum (Sorghum bicolor), Potato (Solanum tuberosum), Tomato (Solanum lycopersicum), Banana (Musa acuminata) and Wine grape (Vitis vinifera) as well as precomputed predictions for protein subcellular localizations using protein sequences.