Factsheet for Os07t0616600-02

Subcellular Localization

min:

: max

Winner_takes_all: nucleus

Predictor Summary:

nucleus 1
cytosol 5
plastid 1
mitochondrion 1

Predictors

GFP

MS/MS

Papers

nucleus: 19621931
nucleus: 23777608
nucleus: 26035336
plasma membrane: 27800704
plastid: 27992503

msms PMID: 23777608 doi

H Mujahid, F Tan, J Zhang, BR Nallamilli, K Pendarvis, Z Peng

Department of Biochemistry, Molecular Biology, Entomology and Plant Pathology, Mississippi State University, Starkville, MS 39762, USA.

msms PMID: 27800704 doi

J Cao, C Yang, L Li, L Jiang, Y Wu, C Wu, Q Bu, G Xia, X Liu, Y Luo, J Liu

Huai'an Institute of Agricultural Sciences, Huai'an, 223001, China., Institute of Analytical Chemistry and Synthetic and Functional Biomolecules Center, College of Chemistry and Molecular Engineering, Peking University, Beijing, 100871, China; and., Northeast Institute of Geography and Agroecology, Key Laboratory of Soybean Molecular Design Breeding, Chinese Academy of Sciences, Harbin, 150081, China., State Key Laboratory of Plant Genomics, Institute of Microbiology, Chinese Academy of Sciences, Beijing, 100101, China.

msms PMID: 26035336 doi

M Li, X Yin, K Sakata, P Yang, S Komatsu

§Department of Life Science and Informatics, Maebashi Institute of Technology, Maebashi 371-0816, Japan., †Key Laboratory of Plant Germplasm Enhancement and Specialty Agriculture, Wuhan Botanical Garden, Chinese Academy of Sciences, Wuhan 430074, China., ‡National Institute of Crop Science, National Agriculture and Food Research Organization, Tsukuba 305-8518, Japan.

msms PMID: 27992503 doi

S Xing, X Meng, L Zhou, H Mujahid, C Zhao, Y Zhang, C Wang, Z Peng

Department of Biochemistry, Molecular Biology, Entomology and Plant Pathology, Mississippi State University, Starkville, Mississippi, United States of America., Institute of Food Crops, Jiangsu Academy of Agricultural Sciences, Jiangsu High Quality Rice Research and Development Center, Nanjing Branch of China National Center for Rice Improvement, Nanjing, Jiangsu, China.

msms PMID: 19621931 doi

T Aki, S Yanagisawa

Department of Applied Biological Chemistry, The University of Tokyo, Japan.

PPI

No PPI Data

Homology

Paralog

locus	Identity	Homology Identity

Ortholog

locus	Homology Species	Location	Identity	Homology Identity
EER99703	Sorghum	cytosol	86.89	86.6
KXG36688	Sorghum	cytosol	86.56	86.27
KXG29217	Sorghum	cytosol	85.25	85.53
Zm00001d006871_P001	Maize	cytosol, extracellular, plastid	85.57	85.02
TraesCS2A01G168300.1	Wheat	cytosol, nucleus, plastid	83.61	83.88
TraesCS2B01G194400.1	Wheat	cytosol, golgi, unclear	83.61	83.88
TraesCS2D01G175700.1	Wheat	cytosol	83.28	83.55
Os03t0182600-02	Rice	cytosol, plasma membrane, plastid	77.7	77.7
Os03t0402400-00	Rice	nucleus	43.28	70.97

Protein Annotations

MapMan:17.1.3.1.1	Gene3D:3.40.50.10490	InterPro:40S_SA_C	EntrezGene:4343909	EMBL:AK058308	EMBL:AK102735
EMBL:AK103952	EMBL:AK105968	ProteinID:BAC79991.1	ProteinID:BAF22191.1	ProteinID:BAT02655.1	ProteinID:EAZ40661.1
GO:GO:0000028	GO:GO:0000447	GO:GO:0000461	GO:GO:0003674	GO:GO:0003735	GO:GO:0005198
GO:GO:0005575	GO:GO:0005622	GO:GO:0005623	GO:GO:0005737	GO:GO:0005829	GO:GO:0005840
GO:GO:0006139	GO:GO:0006407	GO:GO:0006412	GO:GO:0006810	GO:GO:0008150	GO:GO:0008152
GO:GO:0009058	GO:GO:0009987	GO:GO:0015935	GO:GO:0016043	GO:GO:0019538	GO:GO:0022627
GO:GO:0030686	HAMAP:MF_03015	EnsemblPlantsGene:Os07g0616600	EnsemblPlants:Os07t0616600-02	PFAM:PF00318	PFAM:PF16122
PRINTS:PR00395	ScanProsite:PS00963	PANTHER:PTHR11489	PANTHER:PTHR11489:SF15	UniProt:Q8H3I3	InterPro:Ribosomal_S2
InterPro:Ribosomal_S2_CS	InterPro:Ribosomal_S2_euk	InterPro:Ribosomal_S2_euk/arc	InterPro:Ribosomal_S2_flav_dom_sf	SUPFAM:SSF52313	TIGRFAMs:TIGR01012
UniParc:UPI00001B3ADE	RefSeq:XP_015647072.1	SEG:seg	:	:	:

Description

40S ribosomal proteinSimilar to 40S ribosomal protein SA (p40) (Laminin receptor homolog). (Os07t0616600-02)

Coordinates

chr7:-:25413432..25415684

Molecular Weight (calculated)

32973.9 Da

IEP (calculated)

4.706

GRAVY (calculated)

-0.258

Length

305 amino acids

Sequence
(BLAST)

001: MAAEGGAAAR ALSQREQDIQ MMLAADVHLG TKNCDFQMER YVYKRRTDGI YIINLGKTWE KLQLAARVIV AIENPQDIIV QSARPYGQRA VLKFAQYTGA
101: HAIAGRHTPG TFTNQLQTSF SEPRLLILTD PRTDHQPIKE SALGNIPTIA FCDTDSPMRY VDIGIPANNK GKQSIGCLFW LLARMVLQMR GTILPGHKWD
201: VMVDLFFYRD PEEAKEQEEE EAALVAPDYG AVAEYAAPAA DTWGGEWGTD AAAQPAAIPA QAGADWTAAP APAAGGWDTA AAPAPGWEQG SAPVPAAAPT
301: PNWGE

Best Arabidopsis Sequence Match ( AT3G04770.2 )
(BLAST)

001: MAANGVATAG RQVSEKEADI QMMLSADVHL GTKNCNYQME RYVFKRRDDG IYIINLGKTW DKLQMAARVI VAIENPKDII VQSARPYGQR AVLKFAQYTG
101: VNAIAGRHTP GTFTNQMQTS FSEPRLLILT DPRTDHQPIK EGALGNIPTI AFCDTDSPMG FVDIGIPANN KGKHSIGCLF WLLARMVLQM RGTILAAQKW
201: DVMVDLFFYR EPEEAKQEGD EEAEVQADYG MVGGDQWTTA QISDAAWSGE VEQPISAAPA VGVTVAAGWE AASVPAAGWE

Arabidopsis Description

RPSAb40S ribosomal protein SA [Source:UniProtKB/TrEMBL;Acc:F4J4W3]
SUBAcon: [cytosol]

Hydropathy Plot

About CropPAL

The Protein Annotated Locations Database (CropPAL) houses large scale proteomic and GFP localization data from published experimental studies in Soybean (Glycine max), Maize (Zea mays), Wheat (Triticum aestivum), Barley (Hordeum vulgare), Rice (Oryza sativa), Field mustard (Brassica rapa), Canola (Brassica napus), Sorghum (Sorghum bicolor), Potato (Solanum tuberosum), Tomato (Solanum lycopersicum), Banana (Musa acuminata) and Wine grape (Vitis vinifera) as well as precomputed predictions for protein subcellular localizations using protein sequences.