Factsheet for TraesCS2A01G168300.1

Subcellular Localization

min:

: max

Winner_takes_all: plastid, nucleus, cytosol

Predictor Summary:

cytosol 3
mitochondrion 1

Predictors

GFP

MS/MS

Papers

Winner Takes All:	cytosol, nucleus, plastid
Any Predictor:	cytosol
MultiLoc:	cytosol
PProwler:	mitochondrion
WoLF PSORT:	cytosol
YLoc:	cytosol

plastid: 16595579
nucleus: 26228564

msms PMID: 26228564 doi

E Bancel, T Bonnot, M Davanture, G Branlard, M Zivy, P Martre

Blaise Pascal University, UMR1095 Genetics, Diversity and Ecophysiology of Cereals, Avenue des Landais, F-63 170 Aubière, France., CNRS, PAPPSO, UMR 0320/8120 Génétique Quantitative et Évolution - Le Moulon, F-91190 Gif-sur-Yvette, France., INRA, UMR1095 Genetics, Diversity and Ecophysiology of Cereals, 5 chemin de Beaulieu, F-63 039 Clermont-Ferrand, France.

msms PMID: 16595579 doi

Y Balmer, WH Vensel, FM DuPont, BB Buchanan, WJ Hurkman

Department of Plant and Microbial Biology, University of California, 111 Koshland Hall, Berkeley, CA 94720, USA.

PPI

No PPI Data

Homology

Paralog

locus	Identity	Homology Identity

Ortholog

locus	Homology Species	Location	Identity	Homology Identity
TraesCS2D01G175700.1	Wheat	cytosol	99.67	99.67
TraesCS2B01G194400.1	Wheat	cytosol, golgi, unclear	99.34	99.34
Os07t0616600-02	Rice	nucleus	83.88	83.61
KXG29217	Sorghum	cytosol	82.89	82.89
EER99703	Sorghum	cytosol	82.89	82.35
KXG36688	Sorghum	cytosol	82.57	82.03
Zm00001d006871_P001	Maize	cytosol, extracellular, plastid	82.57	81.76
TraesCS4A01G006000.1	Wheat	cytosol	75.66	76.67
CDY55242	Canola	cytosol	60.86	74.9
Solyc06g072120.2.1	Tomato	nucleus	71.38	73.31
CDY03641	Canola	cytosol	70.72	72.88
CDX72910	Canola	cytosol	69.74	72.6
CDX68268	Canola	cytosol, extracellular	68.75	72.57
CDX96403	Canola	cytosol	69.41	72.26
CDY50642	Canola	cytosol	68.42	72.22
CDX82152	Canola	cytosol	70.07	71.96
Bra008030.1-P	Field mustard	cytosol	70.07	71.96
CDY46144	Canola	cytosol	69.08	71.92
Bra032101.1-P	Field mustard	cytosol	69.08	71.92
CDY20307	Canola	cytosol	68.75	71.58
Bra003882.1-P	Field mustard	cytosol	67.76	71.53
AT1G72370.1	Thale cress	cytosol	69.74	71.14
Solyc03g019780.2.1	Tomato	nucleus	69.74	71.14
PGSC0003DMT400069333	Potato	cytosol, mitochondrion	69.08	70.23
VIT_09s0002g00610.t01	Wine grape	cytosol	71.71	69.87
PGSC0003DMT400039497	Potato	cytosol	68.75	69.67
Bra016062.1-P	Field mustard	cytosol	52.96	67.65
CDY42439	Canola	cytosol	48.03	55.94
AT3G04770.1	Thale cress	cytosol	57.89	53.01

Protein Annotations

MapMan:17.1.3.1.1	Gene3D:3.40.50.10490	InterPro:40S_SA_C	GO:GO:0003674	GO:GO:0003735	GO:GO:0005198
GO:GO:0005575	GO:GO:0005622	GO:GO:0005623	GO:GO:0005737	GO:GO:0005840	GO:GO:0006412
GO:GO:0008150	GO:GO:0008152	GO:GO:0009058	GO:GO:0009987	GO:GO:0015935	GO:GO:0019538
HAMAP:MF_03015	PFAM:PF00318	PFAM:PF16122	PRINTS:PR00395	ScanProsite:PS00963	PANTHER:PTHR11489
PANTHER:PTHR11489:SF15	InterPro:Ribosomal_S2	InterPro:Ribosomal_S2_CS	InterPro:Ribosomal_S2_euk	InterPro:Ribosomal_S2_euk/arc	InterPro:Ribosomal_S2_flav_dom_sf
SUPFAM:SSF52313	TIGRFAMs:TIGR01012	EnsemblPlantsGene:TraesCS2A01G168300	EnsemblPlants:TraesCS2A01G168300.1	TIGR:cd01425	SEG:seg

Description

No Description!

Coordinates

chr2A:+:121215739..121217716

Molecular Weight (calculated)

32899.0 Da

IEP (calculated)

4.582

GRAVY (calculated)

-0.248

Length

304 amino acids

Sequence
(BLAST)

001: MAAEGGGVRA LSQREQDIQM MLAADVHLGT KNCDFQMERY VYKRRTDGIY IINLGKTWEK LQMAARVIVA IENPQDIIVQ SARPYGQRAV LKFAQYTGAN
101: AIAGRHTPGT FTNQMQTSFS EPRLLILTDP RTDHQPIKES ALGNIPTIAF CDTDSPMRYV DIGIPANNKG KQSIGCLFWL LARMVLQMRG TILPGHKWEI
201: MVDLFFYRDP EEAKELEEDE ALGAPEYAAV AEYTAPAGDT WGAEWPGAAA PAAAVEAPAG AEWTGAPAPA ADGWDAVAAP APTGWEQGSA PAPAAAPAAT
301: PNWE

Best Arabidopsis Sequence Match ( AT3G04770.2 )
(BLAST)

001: MAANGVATAG RQVSEKEADI QMMLSADVHL GTKNCNYQME RYVFKRRDDG IYIINLGKTW DKLQMAARVI VAIENPKDII VQSARPYGQR AVLKFAQYTG
101: VNAIAGRHTP GTFTNQMQTS FSEPRLLILT DPRTDHQPIK EGALGNIPTI AFCDTDSPMG FVDIGIPANN KGKHSIGCLF WLLARMVLQM RGTILAAQKW
201: DVMVDLFFYR EPEEAKQEGD EEAEVQADYG MVGGDQWTTA QISDAAWSGE VEQPISAAPA VGVTVAAGWE AASVPAAGWE

Arabidopsis Description

RPSAb40S ribosomal protein SA [Source:UniProtKB/TrEMBL;Acc:F4J4W3]
SUBAcon: [cytosol]

Hydropathy Plot

About CropPAL

The Protein Annotated Locations Database (CropPAL) houses large scale proteomic and GFP localization data from published experimental studies in Soybean (Glycine max), Maize (Zea mays), Wheat (Triticum aestivum), Barley (Hordeum vulgare), Rice (Oryza sativa), Field mustard (Brassica rapa), Canola (Brassica napus), Sorghum (Sorghum bicolor), Potato (Solanum tuberosum), Tomato (Solanum lycopersicum), Banana (Musa acuminata) and Wine grape (Vitis vinifera) as well as precomputed predictions for protein subcellular localizations using protein sequences.