Subcellular Localization
min:
: max
Winner_takes_all: cytosol
Predictor Summary:
Predictor Summary:
- nucleus 1
- cytosol 5
- plastid 1
- mitochondrion 1
| Predictors | GFP | MS/MS | Papers |
|---|---|---|---|
PPI
No PPI Data
Homology
Paralog
| locus | Identity | Homology Identity |
|---|
Ortholog
| locus | Homology Species | Location | Identity | Homology Identity |
|---|---|---|---|---|
| KXG36688 | Sorghum | cytosol | 97.71 | 97.71 |
| KXG29217 | Sorghum | cytosol | 93.46 | 94.08 |
| Zm00001d006871_P001 | Maize | cytosol, extracellular, plastid | 93.46 | 93.16 |
| Os07t0616600-02 | Rice | nucleus | 86.6 | 86.89 |
| TraesCS2A01G168300.1 | Wheat | cytosol, nucleus, plastid | 82.35 | 82.89 |
| TraesCS2B01G194400.1 | Wheat | cytosol, golgi, unclear | 82.35 | 82.89 |
| TraesCS2D01G175700.1 | Wheat | cytosol | 82.03 | 82.57 |
| OQU92440 | Sorghum | plastid | 28.76 | 48.09 |
Protein Annotations
| MapMan:17.1.3.1.1 | Gene3D:3.40.50.10490 | InterPro:40S_SA_C | EntrezGene:8079191 | UniProt:C5XE18 | EnsemblPlants:EER99703 |
| ProteinID:EER99703 | ProteinID:EER99703.1 | GO:GO:0000028 | GO:GO:0000447 | GO:GO:0000461 | GO:GO:0003674 |
| GO:GO:0003735 | GO:GO:0005198 | GO:GO:0005575 | GO:GO:0005622 | GO:GO:0005623 | GO:GO:0005737 |
| GO:GO:0005829 | GO:GO:0005840 | GO:GO:0006139 | GO:GO:0006407 | GO:GO:0006412 | GO:GO:0006810 |
| GO:GO:0008150 | GO:GO:0008152 | GO:GO:0009058 | GO:GO:0009987 | GO:GO:0015935 | GO:GO:0016043 |
| GO:GO:0019538 | GO:GO:0022627 | GO:GO:0030529 | GO:GO:0030686 | HAMAP:MF_03015 | PFAM:PF00318 |
| PFAM:PF16122 | PRINTS:PR00395 | ScanProsite:PS00963 | PANTHER:PTHR11489 | PANTHER:PTHR11489:SF15 | InterPro:Ribosomal_S2 |
| InterPro:Ribosomal_S2_CS | InterPro:Ribosomal_S2_euk | InterPro:Ribosomal_S2_euk/arc | InterPro:Ribosomal_S2_flav_dom_sf | EnsemblPlantsGene:SORBI_3002G375100 | SUPFAM:SSF52313 |
| unigene:Sbi.17816 | TIGRFAMs:TIGR01012 | UniParc:UPI0001A83D32 | RefSeq:XP_002463182.1 | SEG:seg | : |
Description
hypothetical protein
Coordinates
chr2:-:73271698..73274256
Molecular Weight (calculated)
32937.0 Da
IEP (calculated)
4.706
GRAVY (calculated)
-0.234
Length
306 amino acids
Sequence
(BLAST)
(BLAST)
001: MAAAPAGGGA RALSQREQDI QMMLAADVHL GTKNCDFQME RYVYKRRTDG IYIINLGKTW EKLQLAARVI VAIENPQDII VQSARPYGQR AVLKFAQYTG
101: AHAIAGRHTP GTFTNQLQTS FSEPRLLILT DPRTDHQPIK ESALGNIPTI AFCDTDSPMR YVDIGIPANN KGKQSIGCLF WLLARMVLQM RGTILPGHKW
201: DIMVDLFFYR DPEEAKEQEE EEALVAPDYG AVAEYTAPGG ENWGGADWGT GEAAAPPAGI PAAGADWAAA PAPPVDGVWD AAAAPPAATG WEEGAAPVAA
301: PTPNWG
101: AHAIAGRHTP GTFTNQLQTS FSEPRLLILT DPRTDHQPIK ESALGNIPTI AFCDTDSPMR YVDIGIPANN KGKQSIGCLF WLLARMVLQM RGTILPGHKW
201: DIMVDLFFYR DPEEAKEQEE EEALVAPDYG AVAEYTAPGG ENWGGADWGT GEAAAPPAGI PAAGADWAAA PAPPVDGVWD AAAAPPAATG WEEGAAPVAA
301: PTPNWG
001: MAANGVATAG RQVSEKEADI QMMLSADVHL GTKNCNYQME RYVFKRRDDG IYIINLGKTW DKLQMAARVI VAIENPKDII VQSARPYGQR AVLKFAQYTG
101: VNAIAGRHTP GTFTNQMQTS FSEPRLLILT DPRTDHQPIK EGALGNIPTI AFCDTDSPMG FVDIGIPANN KGKHSIGCLF WLLARMVLQM RGTILAAQKW
201: DVMVDLFFYR EPEEAKQEGD EEAEVQADYG MVGGDQWTTA QISDAAWSGE VEQPISAAPA VGVTVAAGWE AASVPAAGWE
101: VNAIAGRHTP GTFTNQMQTS FSEPRLLILT DPRTDHQPIK EGALGNIPTI AFCDTDSPMG FVDIGIPANN KGKHSIGCLF WLLARMVLQM RGTILAAQKW
201: DVMVDLFFYR EPEEAKQEGD EEAEVQADYG MVGGDQWTTA QISDAAWSGE VEQPISAAPA VGVTVAAGWE AASVPAAGWE
Arabidopsis Description
RPSAb40S ribosomal protein SA [Source:UniProtKB/TrEMBL;Acc:F4J4W3]
SUBAcon: [cytosol]
SUBAcon: [cytosol]
Hydropathy Plot
About CropPAL
The Protein Annotated Locations Database (CropPAL) houses large scale proteomic and GFP localization data from published experimental studies in Soybean (Glycine max), Maize (Zea mays), Wheat (Triticum aestivum), Barley (Hordeum vulgare), Rice (Oryza sativa), Field mustard (Brassica rapa), Canola (Brassica napus), Sorghum (Sorghum bicolor), Potato (Solanum tuberosum), Tomato (Solanum lycopersicum), Banana (Musa acuminata) and Wine grape (Vitis vinifera) as well as precomputed predictions for protein subcellular localizations using protein sequences.