Factsheet for Bra003882.1-P

Subcellular Localization

min:

: max

Winner_takes_all: cytosol

Predictor Summary:

nucleus 1
plasma membrane 1
cytosol 4
plastid 1
mitochondrion 1

Predictors

GFP

MS/MS

Papers

PPI

No PPI Data

Homology

Paralog

locus	Identity	Homology Identity

Ortholog

locus	Homology Species	Location	Identity	Homology Identity
CDX68268	Canola	cytosol, extracellular	98.96	98.96
Bra016062.1-P	Field mustard	cytosol	75.69	91.6
Bra008030.1-P	Field mustard	cytosol	93.75	91.22
Bra032101.1-P	Field mustard	cytosol	87.5	86.3
AT1G72370.1	Thale cress	cytosol	89.24	86.24
HORVU6Hr1G031720.2	Barley	cytosol	21.53	78.48
Solyc03g019780.2.1	Tomato	nucleus	72.92	70.47
PGSC0003DMT400039497	Potato	cytosol	72.22	69.33
Solyc06g072120.2.1	Tomato	nucleus	71.18	69.26
PGSC0003DMT400069333	Potato	cytosol, mitochondrion	71.53	68.9
TraesCS2D01G175700.1	Wheat	cytosol	71.53	67.76
TraesCS2B01G194400.1	Wheat	cytosol, golgi, unclear	71.53	67.76
TraesCS2A01G168300.1	Wheat	cytosol, nucleus, plastid	71.53	67.76
VIT_09s0002g00610.t01	Wine grape	cytosol	73.26	67.63
KRH06257	Soybean	nucleus	72.92	67.52
TraesCS4A01G006000.1	Wheat	cytosol	69.79	67.0
KRH47681	Soybean	endoplasmic reticulum, nucleus	71.88	66.77
Os03t0402400-00	Rice	nucleus	43.06	66.67
GSMUA_Achr8P30490_001	Banana	cytosol, unclear	70.14	66.23
Zm00001d006871_P001	Maize	cytosol, extracellular, plastid	70.49	66.12
GSMUA_Achr1P21820_001	Banana	cytosol	68.4	66.11
KRH13835	Soybean	cytosol	70.49	65.27
Zm00001d048253_P001	Maize	plastid	69.79	65.26
Zm00001d048256_P002	Maize	plasma membrane	69.79	65.26
GSMUA_AchrUn_...	Banana	cytosol, plasma membrane	66.67	65.08
Zm00001d048346_P001	Maize	plastid	69.79	64.84
TraesCS4D01G298000.1	Wheat	cytosol	69.1	64.61
TraesCS4B01G299100.1	Wheat	cytosol, extracellular, golgi, nucleus, unclear	69.1	64.61
Zm00001d027919_P001	Maize	plastid	69.44	64.52
KRH43602	Soybean	endoplasmic reticulum	71.18	54.09
GSMUA_AchrUn_...	Banana	vacuole	62.15	52.65
Zm00001d027527_P001	Maize	mitochondrion	69.1	52.65
GSMUA_Achr5P22560_001	Banana	cytosol	14.24	50.0
OQU92440	Sorghum	plastid	25.35	39.89

Protein Annotations

MapMan:17.1.3.1.1	Gene3D:3.40.50.10490	EnsemblPlantsGene:Bra003882	EnsemblPlants:Bra003882.1	EnsemblPlants:Bra003882.1-P	GO:GO:0000028
GO:GO:0003674	GO:GO:0003735	GO:GO:0005198	GO:GO:0005575	GO:GO:0005622	GO:GO:0005623
GO:GO:0005737	GO:GO:0005829	GO:GO:0005840	GO:GO:0006412	GO:GO:0008150	GO:GO:0008152
GO:GO:0009058	GO:GO:0009987	GO:GO:0015935	GO:GO:0016043	GO:GO:0019538	GO:GO:0022627
GO:GO:0030529	UniProt:M4CI49	HAMAP:MF_03015	PFAM:PF00318	PRINTS:PR00395	ScanProsite:PS00962
ScanProsite:PS00963	PANTHER:PTHR11489	PANTHER:PTHR11489:SF15	InterPro:Ribosomal_S2	InterPro:Ribosomal_S2_CS	InterPro:Ribosomal_S2_euk
InterPro:Ribosomal_S2_euk/arc	InterPro:Ribosomal_S2_flav_dom_sf	SUPFAM:SSF52313	TIGRFAMs:TIGR01012	UniParc:UPI0002541809	SEG:seg

Description

AT1G72370 (E=2e-134) P40, AP40, RP40, RPSAA | P40; structural constituent of ribosome

Coordinates

chrA07:+:15539188..15540784

Molecular Weight (calculated)

31499.4 Da

IEP (calculated)

4.873

GRAVY (calculated)

-0.278

Length

288 amino acids

Sequence
(BLAST)

001: MATQGSAQKE ADIKMMCAAE VHLGTTNCNY QMERYVFKRR NDGIYIFNLG KTWEKLQMAA RVIVAIENPQ DIIVQSARPY GQRAVLKFAQ YTGANAIAGR
101: HTPGTFTNQM QTSFSEPRLL ILTDPRTDHQ PIKEGALGNI PIIAFCATDS PMRFVDIGIP ANNKGKHSIG CLFWLLARMV LQMRGTIRPA QKWDVMVDLF
201: FYREPEEAKP EDEDEVAPQA EFGLPAPEYG GDQWTTAAIP DAAWPGEGQA PISAAPAAAS WNDSTVAPAA EGGWDAAVPP TTAAAGWE

Best Arabidopsis Sequence Match ( AT1G72370.1 )
(BLAST)

001: MATNGSASSA QLSQKEADVR MMCAAEVHLG TKNCNYQMER YVFKRRNDGI YIFNLGKTWE KLQMAARVIV AIENPQDIIV QSARPYGQRA VLKFAQYTGA
101: NAIAGRHTPG TFTNQMQTSF SEPRLLILTD PRTDHQPIKE GALGNIPIIA FCDTDSPMRF VDIGIPANNK GKHSIGCLFW LLARMVLQMR GTIAAGQKWD
201: VMVDLFFYRE PEETKPEDED EAGPQAEYGA LPAPEYGMVG GDQWTTAQIP DAAWPGEGQA PISAAPAAAS WSDSAAAPAD GGWEAAAPPS GAPAAGWE

Arabidopsis Description

RPSAA40S ribosomal protein SA [Source:UniProtKB/TrEMBL;Acc:A0A178WNA1]
SUBAcon: [cytosol]

Hydropathy Plot

About CropPAL

The Protein Annotated Locations Database (CropPAL) houses large scale proteomic and GFP localization data from published experimental studies in Soybean (Glycine max), Maize (Zea mays), Wheat (Triticum aestivum), Barley (Hordeum vulgare), Rice (Oryza sativa), Field mustard (Brassica rapa), Canola (Brassica napus), Sorghum (Sorghum bicolor), Potato (Solanum tuberosum), Tomato (Solanum lycopersicum), Banana (Musa acuminata) and Wine grape (Vitis vinifera) as well as precomputed predictions for protein subcellular localizations using protein sequences.