Factsheet for GSMUA_Achr8P30490_001

Subcellular Localization

min:

: max

Winner_takes_all: unclear, cytosol

Predictor Summary:

nucleus 1
cytosol 5
plastid 1
mitochondrion 1

Predictors

GFP

MS/MS

Papers

unclear: 20177697

msms PMID: 20177697 doi

A Vertommen, B Panis, R Swennen, SC Carpentier

Division of Crop Biotechnics, Department of Biosystems, K U Leuven, Leuven, Belgium. Annelies.vertommen@biw.kuleuven.be

PPI

No PPI Data

Homology

Paralog

locus	Identity	Homology Identity

Ortholog

locus	Homology Species	Location	Identity	Homology Identity
GSMUA_AchrUn_...	Banana	cytosol, plasma membrane	81.31	84.07
GSMUA_Achr1P21820_001	Banana	cytosol	80.66	82.55
CDY55242	Canola	cytosol	59.02	72.87
Solyc06g072120.2.1	Tomato	nucleus	69.18	71.28
VIT_09s0002g00610.t01	Wine grape	cytosol	72.46	70.83
CDX68268	Canola	cytosol, extracellular	66.56	70.49
CDY50642	Canola	cytosol	66.56	70.49
CDY03641	Canola	cytosol	67.87	70.17
Bra003882.1-P	Field mustard	cytosol	66.23	70.14
Bra008030.1-P	Field mustard	cytosol	67.87	69.93
PGSC0003DMT400069333	Potato	cytosol, mitochondrion	68.52	69.9
Solyc03g019780.2.1	Tomato	nucleus	68.2	69.8
CDX82152	Canola	cytosol	67.54	69.59
CDY46144	Canola	cytosol	66.56	69.52
Bra032101.1-P	Field mustard	cytosol	66.56	69.52
PGSC0003DMT400039497	Potato	cytosol	68.2	69.33
CDY20307	Canola	cytosol	66.23	69.18
CDX72910	Canola	cytosol	65.57	68.49
GSMUA_Achr5P22560_001	Banana	cytosol	18.36	68.29
CDX96403	Canola	cytosol	65.25	68.15
AT1G72370.1	Thale cress	cytosol	65.9	67.45
GSMUA_AchrUn_...	Banana	vacuole	73.44	65.88
Bra016062.1-P	Field mustard	cytosol	50.16	64.29
CDY42439	Canola	cytosol	45.57	53.26
AT3G04770.1	Thale cress	cytosol	56.72	52.11

Protein Annotations

MapMan:17.1.3.1.1	Gene3D:3.40.50.10490	GO:GO:0000028	GO:GO:0003674	GO:GO:0003735	GO:GO:0005198
GO:GO:0005575	GO:GO:0005622	GO:GO:0005623	GO:GO:0005737	GO:GO:0005829	GO:GO:0005840
GO:GO:0006412	GO:GO:0008150	GO:GO:0008152	GO:GO:0009058	GO:GO:0009987	GO:GO:0015935
GO:GO:0016043	GO:GO:0019538	GO:GO:0022627	GO:GO:0030529	EnsemblPlantsGene:GSMUA_Achr8G30490_001	EnsemblPlants:GSMUA_Achr8P30490_001
EnsemblPlants:GSMUA_Achr8T30490_001	UniProt:M0TV01	HAMAP:MF_03015	PFAM:PF00318	PRINTS:PR00395	ScanProsite:PS00962
ScanProsite:PS00963	PANTHER:PTHR11489	PANTHER:PTHR11489:SF15	InterPro:Ribosomal_S2	InterPro:Ribosomal_S2_CS	InterPro:Ribosomal_S2_euk
InterPro:Ribosomal_S2_euk/arc	InterPro:Ribosomal_S2_flav_dom_sf	SUPFAM:SSF52313	TIGRFAMs:TIGR01012	UniParc:UPI0002956121	SEG:seg

Description

40S ribosomal protein SA [Source:GMGC_GENE;Acc:GSMUA_Achr8G30490_001]

Coordinates

chr8:+:32533363..32537354

Molecular Weight (calculated)

33381.9 Da

IEP (calculated)

5.011

GRAVY (calculated)

-0.204

Length

305 amino acids

Sequence
(BLAST)

001: MATRVLSPKE QDIQMMLAAN VHLGARNCDF QMERYVYKRR SDGVHIINLG KTWEKLQLAA RVIVAIENPQ DIIVQSARPY GQRAVLKFAQ YTGAHPIAGR
101: HTPGTFTNQL QTSFSEPRLL ILTDPRTDHQ PIKESALGNI PTIAFCDTDS PMRYVDIGIP ANNKGKHSIG CLFWLLSRMV LQMRGTIPLG CKWEVMVDLF
201: FYRDPEEAKE QEEEEAPVAP DFGAVPGYGA MVPNEQWTTE QWMPDVGAVP AVVPLVPGVE WTAAQAPIAA GGWDVAAAPP ADGAVAPPPS GWETAPPAAS
301: SGWES

Best Arabidopsis Sequence Match ( AT1G72370.1 )
(BLAST)

001: MATNGSASSA QLSQKEADVR MMCAAEVHLG TKNCNYQMER YVFKRRNDGI YIFNLGKTWE KLQMAARVIV AIENPQDIIV QSARPYGQRA VLKFAQYTGA
101: NAIAGRHTPG TFTNQMQTSF SEPRLLILTD PRTDHQPIKE GALGNIPIIA FCDTDSPMRF VDIGIPANNK GKHSIGCLFW LLARMVLQMR GTIAAGQKWD
201: VMVDLFFYRE PEETKPEDED EAGPQAEYGA LPAPEYGMVG GDQWTTAQIP DAAWPGEGQA PISAAPAAAS WSDSAAAPAD GGWEAAAPPS GAPAAGWE

Arabidopsis Description

RPSAA40S ribosomal protein SA [Source:UniProtKB/TrEMBL;Acc:A0A178WNA1]
SUBAcon: [cytosol]

Hydropathy Plot

About CropPAL

The Protein Annotated Locations Database (CropPAL) houses large scale proteomic and GFP localization data from published experimental studies in Soybean (Glycine max), Maize (Zea mays), Wheat (Triticum aestivum), Barley (Hordeum vulgare), Rice (Oryza sativa), Field mustard (Brassica rapa), Canola (Brassica napus), Sorghum (Sorghum bicolor), Potato (Solanum tuberosum), Tomato (Solanum lycopersicum), Banana (Musa acuminata) and Wine grape (Vitis vinifera) as well as precomputed predictions for protein subcellular localizations using protein sequences.