Subcellular Localization
min:
: max
Winner_takes_all: cytosol
Predictor Summary:
Predictor Summary:
- nucleus 1
- cytosol 3
- mitochondrion 1
| Predictors | GFP | MS/MS | Papers | ||||||||||||||
|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|
|
PPI
No PPI Data
Homology
Paralog
| locus | Identity | Homology Identity |
|---|
Ortholog
| locus | Homology Species | Location | Identity | Homology Identity |
|---|---|---|---|---|
| CDX68268 | Canola | cytosol, extracellular | 99.65 | 99.65 |
| CDX72910 | Canola | cytosol | 94.1 | 92.81 |
| CDX96403 | Canola | cytosol | 93.75 | 92.47 |
| CDX82152 | Canola | cytosol | 94.44 | 91.89 |
| CDY03641 | Canola | cytosol | 93.75 | 91.53 |
| CDY46144 | Canola | cytosol | 88.89 | 87.67 |
| CDY20307 | Canola | cytosol | 88.54 | 87.33 |
| CDY55242 | Canola | cytosol | 74.65 | 87.04 |
| AT1G72370.1 | Thale cress | cytosol | 89.24 | 86.24 |
| HORVU6Hr1G031720.2 | Barley | cytosol | 21.53 | 78.48 |
| Solyc03g019780.2.1 | Tomato | nucleus | 72.92 | 70.47 |
| Solyc06g072120.2.1 | Tomato | nucleus | 71.88 | 69.93 |
| PGSC0003DMT400069333 | Potato | cytosol, mitochondrion | 72.22 | 69.57 |
| PGSC0003DMT400039497 | Potato | cytosol | 72.22 | 69.33 |
| TraesCS2A01G168300.1 | Wheat | cytosol, nucleus, plastid | 72.22 | 68.42 |
| TraesCS2B01G194400.1 | Wheat | cytosol, golgi, unclear | 72.22 | 68.42 |
| TraesCS2D01G175700.1 | Wheat | cytosol | 72.22 | 68.42 |
| VIT_09s0002g00610.t01 | Wine grape | cytosol | 73.96 | 68.27 |
| KRH06257 | Soybean | nucleus | 73.61 | 68.17 |
| TraesCS4A01G006000.1 | Wheat | cytosol | 70.49 | 67.67 |
| KRH47681 | Soybean | endoplasmic reticulum, nucleus | 72.57 | 67.42 |
| Os03t0402400-00 | Rice | nucleus | 43.4 | 67.2 |
| Zm00001d006871_P001 | Maize | cytosol, extracellular, plastid | 71.18 | 66.78 |
| GSMUA_Achr8P30490_001 | Banana | cytosol, unclear | 70.49 | 66.56 |
| KRH13835 | Soybean | cytosol | 71.53 | 66.24 |
| Zm00001d048256_P002 | Maize | plasma membrane | 70.49 | 65.91 |
| Zm00001d048253_P001 | Maize | plastid | 70.49 | 65.91 |
| GSMUA_Achr1P21820_001 | Banana | cytosol | 68.06 | 65.77 |
| Zm00001d048346_P001 | Maize | plastid | 70.49 | 65.48 |
| TraesCS4B01G299100.1 | Wheat | cytosol, extracellular, golgi, nucleus, unclear | 69.79 | 65.26 |
| TraesCS4D01G298000.1 | Wheat | cytosol | 69.79 | 65.26 |
| Zm00001d027919_P001 | Maize | plastid | 70.14 | 65.16 |
| GSMUA_AchrUn_... | Banana | cytosol, plasma membrane | 66.67 | 65.08 |
| CDY42439 | Canola | cytosol | 54.17 | 59.77 |
| KRH43602 | Soybean | endoplasmic reticulum | 72.22 | 54.88 |
| Zm00001d027527_P001 | Maize | mitochondrion | 69.79 | 53.17 |
| GSMUA_AchrUn_... | Banana | vacuole | 62.5 | 52.94 |
| GSMUA_Achr5P22560_001 | Banana | cytosol | 14.24 | 50.0 |
| OQU92440 | Sorghum | plastid | 25.0 | 39.34 |
Protein Annotations
| MapMan:17.1.3.1.1 | Gene3D:3.40.50.10490 | GO:A0A078IL52 | UniProt:A0A078IL52 | EnsemblPlants:CDY50642 | ProteinID:CDY50642 |
| ProteinID:CDY50642.1 | GO:GO:0000028 | GO:GO:0003674 | GO:GO:0003735 | GO:GO:0005198 | GO:GO:0005575 |
| GO:GO:0005622 | GO:GO:0005623 | GO:GO:0005737 | GO:GO:0005829 | GO:GO:0005840 | GO:GO:0006412 |
| GO:GO:0008150 | GO:GO:0008152 | GO:GO:0009058 | GO:GO:0009987 | GO:GO:0015935 | GO:GO:0016043 |
| GO:GO:0019538 | GO:GO:0022627 | GO:GO:0030529 | EnsemblPlantsGene:GSBRNA2T00097197001 | HAMAP:MF_03015 | PFAM:PF00318 |
| PRINTS:PR00395 | ScanProsite:PS00962 | ScanProsite:PS00963 | PANTHER:PTHR11489 | PANTHER:PTHR11489:SF15 | InterPro:Ribosomal_S2 |
| InterPro:Ribosomal_S2_CS | InterPro:Ribosomal_S2_euk | InterPro:Ribosomal_S2_euk/arc | InterPro:Ribosomal_S2_flav_dom_sf | SUPFAM:SSF52313 | TIGRFAMs:TIGR01012 |
| UniParc:UPI0004EBB1BD | SEG:seg | : | : | : | : |
Description
BnaC06g24350D40S ribosomal protein SA [Source:UniProtKB/TrEMBL;Acc:A0A078IL52]
Coordinates
chrLK032928:+:80667..82519
Molecular Weight (calculated)
31614.5 Da
IEP (calculated)
4.884
GRAVY (calculated)
-0.309
Length
288 amino acids
Sequence
(BLAST)
(BLAST)
001: MATQGSAQKE ADIKMMCAAE VHLGTKNCNY QMERYVFKRR NDGIYIFNLG KTWEKLQMAA RVIVAIENPQ DIIVQSARPY GQRAVLKFAQ YTGANAIAGR
101: HTPGTFTNQM QTSFSEPRLL ILTDPRTDHQ PIKEGALGNI PIIAFCDTDS PMRFVDIGIP ANNKGKHSIG CLFWLLARMV LQMRGTIRPA QKWDVMVDLF
201: FYREPEEAKP EDEDEVAPQA EFGLPAPEYG GDQWTTAAIP DAAWPGEAQA PISAAPAAAS WNDSTVAPAA EGGWDTAVPP TTAAAGWE
101: HTPGTFTNQM QTSFSEPRLL ILTDPRTDHQ PIKEGALGNI PIIAFCDTDS PMRFVDIGIP ANNKGKHSIG CLFWLLARMV LQMRGTIRPA QKWDVMVDLF
201: FYREPEEAKP EDEDEVAPQA EFGLPAPEYG GDQWTTAAIP DAAWPGEAQA PISAAPAAAS WNDSTVAPAA EGGWDTAVPP TTAAAGWE
001: MATNGSASSA QLSQKEADVR MMCAAEVHLG TKNCNYQMER YVFKRRNDGI YIFNLGKTWE KLQMAARVIV AIENPQDIIV QSARPYGQRA VLKFAQYTGA
101: NAIAGRHTPG TFTNQMQTSF SEPRLLILTD PRTDHQPIKE GALGNIPIIA FCDTDSPMRF VDIGIPANNK GKHSIGCLFW LLARMVLQMR GTIAAGQKWD
201: VMVDLFFYRE PEETKPEDED EAGPQAEYGA LPAPEYGMVG GDQWTTAQIP DAAWPGEGQA PISAAPAAAS WSDSADGGWE AAAPPSGAPA AGWE
101: NAIAGRHTPG TFTNQMQTSF SEPRLLILTD PRTDHQPIKE GALGNIPIIA FCDTDSPMRF VDIGIPANNK GKHSIGCLFW LLARMVLQMR GTIAAGQKWD
201: VMVDLFFYRE PEETKPEDED EAGPQAEYGA LPAPEYGMVG GDQWTTAQIP DAAWPGEGQA PISAAPAAAS WSDSADGGWE AAAPPSGAPA AGWE
Arabidopsis Description
RPSAA40S ribosomal protein SA [Source:UniProtKB/TrEMBL;Acc:A0A178WNA1]
SUBAcon: [cytosol]
SUBAcon: [cytosol]
Hydropathy Plot
About CropPAL
The Protein Annotated Locations Database (CropPAL) houses large scale proteomic and GFP localization data from published experimental studies in Soybean (Glycine max), Maize (Zea mays), Wheat (Triticum aestivum), Barley (Hordeum vulgare), Rice (Oryza sativa), Field mustard (Brassica rapa), Canola (Brassica napus), Sorghum (Sorghum bicolor), Potato (Solanum tuberosum), Tomato (Solanum lycopersicum), Banana (Musa acuminata) and Wine grape (Vitis vinifera) as well as precomputed predictions for protein subcellular localizations using protein sequences.