Subcellular Localization
min:
: max
Winner_takes_all: cytosol
Predictor Summary:
Predictor Summary:
- cytosol 3
- mitochondrion 1
| Predictors | GFP | MS/MS | Papers | ||||||||||||
|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|
|
PPI
No PPI Data
Homology
Paralog
| locus | Identity | Homology Identity |
|---|
Ortholog
| locus | Homology Species | Location | Identity | Homology Identity |
|---|---|---|---|---|
| TraesCS4B01G299100.1 | Wheat | cytosol, extracellular, golgi, nucleus, unclear | 88.67 | 86.36 |
| TraesCS4D01G298000.1 | Wheat | cytosol | 88.67 | 86.36 |
| Zm00001d048346_P001 | Maize | plastid | 82.67 | 80.0 |
| Os03t0182600-02 | Rice | cytosol, plasma membrane, plastid | 80.67 | 79.34 |
| Zm00001d027919_P001 | Maize | plastid | 81.67 | 79.03 |
| Zm00001d048256_P002 | Maize | plasma membrane | 81.0 | 78.9 |
| Zm00001d048253_P001 | Maize | plastid | 80.33 | 78.25 |
| TraesCS2A01G168300.1 | Wheat | cytosol, nucleus, plastid | 76.67 | 75.66 |
| CDY55242 | Canola | cytosol | 61.33 | 74.49 |
| Solyc06g072120.2.1 | Tomato | nucleus | 72.33 | 73.31 |
| PGSC0003DMT400069333 | Potato | cytosol, mitochondrion | 72.67 | 72.91 |
| Bra032101.1-P | Field mustard | cytosol | 70.67 | 72.6 |
| CDY46144 | Canola | cytosol | 70.67 | 72.6 |
| CDY20307 | Canola | cytosol | 70.33 | 72.26 |
| VIT_09s0002g00610.t01 | Wine grape | cytosol | 74.67 | 71.79 |
| CDX68268 | Canola | cytosol, extracellular | 68.0 | 70.83 |
| CDY50642 | Canola | cytosol | 67.67 | 70.49 |
| Solyc03g019780.2.1 | Tomato | nucleus | 70.0 | 70.47 |
| CDX82152 | Canola | cytosol | 69.33 | 70.27 |
| Bra008030.1-P | Field mustard | cytosol | 69.33 | 70.27 |
| CDX72910 | Canola | cytosol | 68.33 | 70.21 |
| CDY03641 | Canola | cytosol | 69.0 | 70.17 |
| CDX96403 | Canola | cytosol | 68.0 | 69.86 |
| Bra003882.1-P | Field mustard | cytosol | 67.0 | 69.79 |
| PGSC0003DMT400039497 | Potato | cytosol | 69.0 | 69.0 |
| AT1G72370.1 | Thale cress | cytosol | 68.33 | 68.79 |
| HORVU4Hr1G077240.1 | Barley | cytosol | 87.33 | 65.66 |
| Bra016062.1-P | Field mustard | cytosol | 51.33 | 64.71 |
| Zm00001d027527_P001 | Maize | mitochondrion | 81.0 | 64.29 |
| GSMUA_Achr5P22560_001 | Banana | cytosol | 16.0 | 58.54 |
| AT3G04770.1 | Thale cress | cytosol | 59.67 | 53.92 |
| CDY42439 | Canola | cytosol | 46.33 | 53.26 |
| KRH66387 | Soybean | peroxisome | 10.33 | 47.69 |
| KRG88565 | Soybean | cytosol | 13.33 | 44.94 |
Protein Annotations
| MapMan:17.1.3.1.1 | Gene3D:3.40.50.10490 | GO:GO:0003674 | GO:GO:0003735 | GO:GO:0005198 | GO:GO:0005575 |
| GO:GO:0005622 | GO:GO:0005623 | GO:GO:0005737 | GO:GO:0005840 | GO:GO:0006412 | GO:GO:0008150 |
| GO:GO:0008152 | GO:GO:0009058 | GO:GO:0009987 | GO:GO:0015935 | GO:GO:0019538 | HAMAP:MF_03015 |
| PFAM:PF00318 | PRINTS:PR00395 | ScanProsite:PS00963 | PANTHER:PTHR11489 | PANTHER:PTHR11489:SF15 | InterPro:Ribosomal_S2 |
| InterPro:Ribosomal_S2_CS | InterPro:Ribosomal_S2_euk | InterPro:Ribosomal_S2_euk/arc | InterPro:Ribosomal_S2_flav_dom_sf | SUPFAM:SSF52313 | TIGRFAMs:TIGR01012 |
| EnsemblPlantsGene:TraesCS4A01G006000 | EnsemblPlants:TraesCS4A01G006000.1 | TIGR:cd01425 | SEG:seg | : | : |
Description
No Description!
Coordinates
chr4A:+:3446172..3447998
Molecular Weight (calculated)
32414.4 Da
IEP (calculated)
4.769
GRAVY (calculated)
-0.267
Length
300 amino acids
Sequence
(BLAST)
(BLAST)
001: MAAAAGEAPR ALSQKEQDIQ MMLAADVHLG TKNCDFQMER YAYKRRSDGI YIINLGKTWE KLQLAARVIV AIENPQDIIV QSARPYGQRA VLKFAQHTGA
101: NAIAGRHTPG TFTNQMQTSF SEPRLLILTD PRTDHQPIKE SALGNIPTIA FCDTDSPMRY VDIGIPANNK GRNSIGCLYW LLARMVLQMR GTILPGHKWD
201: VMVDLFFYRD PEEAKEQEDE AAGAPEYAAI TDYGAAAGQW GGDQWTSDAP APPPVTAPVA GGDGWDAAGA PVAVEGAVPA PVVAATGWDA AVQPPAQGWE
101: NAIAGRHTPG TFTNQMQTSF SEPRLLILTD PRTDHQPIKE SALGNIPTIA FCDTDSPMRY VDIGIPANNK GRNSIGCLYW LLARMVLQMR GTILPGHKWD
201: VMVDLFFYRD PEEAKEQEDE AAGAPEYAAI TDYGAAAGQW GGDQWTSDAP APPPVTAPVA GGDGWDAAGA PVAVEGAVPA PVVAATGWDA AVQPPAQGWE
001: MAANGVATAG RQVSEKEADI QMMLSADVHL GTKNCNYQME RYVFKRRDDG IYIINLGKTW DKLQMAARVI VAIENPKDII VQSARPYGQR AVLKFAQYTG
101: VNAIAGRHTP GTFTNQMQTS FSEPRLLILT DPRTDHQPIK EGALGNIPTI AFCDTDSPMG FVDIGIPANN KGKHSIGCLF WLLARMVLQM RGTILAAQKW
201: DVMVDLFFYR EPEEAKQEGD EEAEVQADYG MVGGDQWTTA QISDAAWSGE VEQPISAAPA VGVTVAAGWE AASVPAAGWE
101: VNAIAGRHTP GTFTNQMQTS FSEPRLLILT DPRTDHQPIK EGALGNIPTI AFCDTDSPMG FVDIGIPANN KGKHSIGCLF WLLARMVLQM RGTILAAQKW
201: DVMVDLFFYR EPEEAKQEGD EEAEVQADYG MVGGDQWTTA QISDAAWSGE VEQPISAAPA VGVTVAAGWE AASVPAAGWE
Arabidopsis Description
RPSAb40S ribosomal protein SA [Source:UniProtKB/TrEMBL;Acc:F4J4W3]
SUBAcon: [cytosol]
SUBAcon: [cytosol]
Hydropathy Plot
About CropPAL
The Protein Annotated Locations Database (CropPAL) houses large scale proteomic and GFP localization data from published experimental studies in Soybean (Glycine max), Maize (Zea mays), Wheat (Triticum aestivum), Barley (Hordeum vulgare), Rice (Oryza sativa), Field mustard (Brassica rapa), Canola (Brassica napus), Sorghum (Sorghum bicolor), Potato (Solanum tuberosum), Tomato (Solanum lycopersicum), Banana (Musa acuminata) and Wine grape (Vitis vinifera) as well as precomputed predictions for protein subcellular localizations using protein sequences.