Factsheet for Solyc06g072120.2.1

Subcellular Localization

min:

: max

Winner_takes_all: nucleus

Predictor Summary:

nucleus 1
cytosol 5
plastid 1
mitochondrion 1

Predictors

GFP

MS/MS

Papers

nucleus: 25464976
unclear: 26455813
nucleus: 28394025

msms PMID: 28394025 doi

AJM Howden, R Stam, V Martinez Heredia, GB Motion, S Ten Have, K Hodge, TM Marques Monteiro Amaro, E Huitema

Cell and Molecular Sciences, JHI, Invergowrie, Dundee, DD2 5DA, UK., Division of Plant Science, School of Life Sciences, University of Dundee at the James Hutton Institute (JHI), Invergowrie, Dundee, DD2 5DA, UK., Dundee Effector Consortium, JHI, Invergowrie, Dundee, DD2 5DA, UK., Section of Population Genetics, Technische Universität München, 85354, Freising, Germany., Wellcome Trust Centre for Gene Regulation and Expression, School of Life Sciences, University of Dundee, Dow Street, Dundee, DD1 5EH, UK.

msms PMID: 26455813 doi

P Paul, P Chaturvedi, M Selymesi, A Ghatak, A Mesihovic, KD Scharf, W Weckwerth, S Simm, E Schleiff

Goethe University, Department of Biosciences, Molecular Cell Biology of Plants, Frankfurt/Main, Germany., Goethe University, Department of Biosciences, Molecular Cell Biology of Plants, Frankfurt/Main, Germany; SPOT-ITN Consortium., Goethe University, Department of Biosciences, Molecular Cell Biology of Plants, Frankfurt/Main, Germany; SPOT-ITN Consortium; Goethe University, Cluster of Excellence Frankfurt, Frankfurt/Main, Germany; Goethe University, Buchmann Institute of Molecular Life Sciences, Frankfurt/Main, Germany. Electronic address: schleiff@bio.uni-frankfurt.de., SPOT-ITN Consortium; University of Vienna, Department of Ecogenomics and Systems biology, Vienna, Austria., University of Vienna, Department of Ecogenomics and Systems biology, Vienna, Austria; School of Biotechnology and Bioinformatics, D.Y. Patil University, Mumbai, India.

msms PMID: 25464976 doi

Y Wang, W Wang, J Cai, Y Zhang, G Qin, S Tian

PPI

No PPI Data

Homology

Paralog

locus	Identity	Homology Identity

Ortholog

locus	Homology Species	Location	Identity	Homology Identity
PGSC0003DMT400069333	Potato	cytosol, mitochondrion	96.28	95.32
Solyc03g019780.2.1	Tomato	nucleus	82.43	81.88
CDY55242	Canola	cytosol	62.5	74.9
Bra032101.1-P	Field mustard	cytosol	72.64	73.63
CDY46144	Canola	cytosol	72.64	73.63
HORVU6Hr1G031720.2	Barley	cytosol	19.59	73.42
CDY20307	Canola	cytosol	72.3	73.29
CDX72910	Canola	cytosol	71.96	72.95
TraesCS4A01G006000.1	Wheat	cytosol	73.31	72.33
CDX96403	Canola	cytosol	71.28	72.26
CDX68268	Canola	cytosol, extracellular	70.27	72.22
CDY50642	Canola	cytosol	69.93	71.88
CDY03641	Canola	cytosol	71.28	71.53
VIT_09s0002g00610.t01	Wine grape	cytosol	75.34	71.47
TraesCS4B01G299100.1	Wheat	cytosol, extracellular, golgi, nucleus, unclear	74.32	71.43
TraesCS4D01G298000.1	Wheat	cytosol	74.32	71.43
TraesCS2D01G175700.1	Wheat	cytosol	73.31	71.38
TraesCS2A01G168300.1	Wheat	cytosol, nucleus, plastid	73.31	71.38
Zm00001d048346_P001	Maize	plastid	74.66	71.29
Bra003882.1-P	Field mustard	cytosol	69.26	71.18
Bra008030.1-P	Field mustard	cytosol	70.95	70.95
CDX82152	Canola	cytosol	70.95	70.95
Zm00001d048256_P002	Maize	plasma membrane	73.65	70.78
KRH06257	Soybean	nucleus	74.32	70.74
TraesCS2B01G194400.1	Wheat	cytosol, golgi, unclear	72.64	70.72
KRH47681	Soybean	endoplasmic reticulum, nucleus	73.99	70.65
Zm00001d027919_P001	Maize	plastid	73.65	70.32
Zm00001d048253_P001	Maize	plastid	72.3	69.48
Zm00001d006871_P001	Maize	cytosol, extracellular, plastid	71.96	69.38
GSMUA_Achr8P30490_001	Banana	cytosol, unclear	71.28	69.18
Os03t0402400-00	Rice	nucleus	43.24	68.82
GSMUA_Achr1P21820_001	Banana	cytosol	68.92	68.46
GSMUA_AchrUn_...	Banana	cytosol, plasma membrane	67.91	68.14
Bra016062.1-P	Field mustard	cytosol	54.73	68.07
KRH13835	Soybean	cytosol	70.95	67.52
Zm00001d027527_P001	Maize	mitochondrion	73.99	57.94
KRH43602	Soybean	endoplasmic reticulum	71.62	55.94
GSMUA_AchrUn_...	Banana	vacuole	62.5	54.41
GSMUA_Achr5P22560_001	Banana	cytosol	14.86	53.66
CDY42439	Canola	cytosol	46.62	52.87
AT3G04770.1	Thale cress	cytosol	58.78	52.41
OQU92440	Sorghum	plastid	27.03	43.72

Protein Annotations

MapMan:17.1.3.1.1	Gene3D:3.40.50.10490	GO:GO:0000028	GO:GO:0000447	GO:GO:0000461	GO:GO:0003674
GO:GO:0003735	GO:GO:0005198	GO:GO:0005575	GO:GO:0005622	GO:GO:0005623	GO:GO:0005737
GO:GO:0005829	GO:GO:0005840	GO:GO:0006139	GO:GO:0006407	GO:GO:0006412	GO:GO:0006810
GO:GO:0008150	GO:GO:0008152	GO:GO:0009058	GO:GO:0009987	GO:GO:0015935	GO:GO:0016043
GO:GO:0019538	GO:GO:0022627	GO:GO:0030529	GO:GO:0030686	UniProt:K4C8T4	HAMAP:MF_03015
PFAM:PF00318	PRINTS:PR00395	ScanProsite:PS00962	ScanProsite:PS00963	PANTHER:PTHR11489	PANTHER:PTHR11489:SF15
InterPro:Ribosomal_S2	InterPro:Ribosomal_S2_CS	InterPro:Ribosomal_S2_euk	InterPro:Ribosomal_S2_euk/arc	InterPro:Ribosomal_S2_flav_dom_sf	SUPFAM:SSF52313
EnsemblPlantsGene:Solyc06g072120.2	EnsemblPlants:Solyc06g072120.2.1	TIGRFAMs:TIGR01012	UniParc:UPI0002765588	SEG:seg	:

Description

40S ribosomal protein SA [Source:UniProtKB/TrEMBL;Acc:K4C8T4]

Coordinates

chr6:-:44447131..44450592

Molecular Weight (calculated)

32188.1 Da

IEP (calculated)

4.695

GRAVY (calculated)

-0.249

Length

296 amino acids

Sequence
(BLAST)

001: MATQDVRTLS TKEADIQMML AAEVHLGTKN CDFQMERYAF KRRNDGIYII NLGKTWEKLQ MAARVIVAIE NPQDIIVQSA RPYGQRAVLK FAQYTGAHAI
101: AGRHTPGTFT NQLQTSYSEP RLLILTDPRT DHQPIKEAAL GNIPTIAFCD TDSPMRYVDI GIPANNKGKH SIGVLFWILA RMVLQMRGAI NQGPKWDVMV
201: DLFFYREPEE AKEQEEEVPA IADYADYSAS AALGGDWTSS QIPEAQWTAD AAAPAVGGGW AGDGAADGGW DAAAAPAPVP LPVPDVAPTS GATGWE

Best Arabidopsis Sequence Match ( AT3G04770.2 )
(BLAST)

001: MAANGVATAG RQVSEKEADI QMMLSADVHL GTKNCNYQME RYVFKRRDDG IYIINLGKTW DKLQMAARVI VAIENPKDII VQSARPYGQR AVLKFAQYTG
101: VNAIAGRHTP GTFTNQMQTS FSEPRLLILT DPRTDHQPIK EGALGNIPTI AFCDTDSPMG FVDIGIPANN KGKHSIGCLF WLLARMVLQM RGTILAAQKW
201: DVMVDLFFYR EPEEAKQEGD EEAEVQADYG MVGGDQWTTA QISDAAWSGE VEQPISAAPA VGVTVAAGWE AASVPAAGWE

Arabidopsis Description

RPSAb40S ribosomal protein SA [Source:UniProtKB/TrEMBL;Acc:F4J4W3]
SUBAcon: [cytosol]

Hydropathy Plot

About CropPAL

The Protein Annotated Locations Database (CropPAL) houses large scale proteomic and GFP localization data from published experimental studies in Soybean (Glycine max), Maize (Zea mays), Wheat (Triticum aestivum), Barley (Hordeum vulgare), Rice (Oryza sativa), Field mustard (Brassica rapa), Canola (Brassica napus), Sorghum (Sorghum bicolor), Potato (Solanum tuberosum), Tomato (Solanum lycopersicum), Banana (Musa acuminata) and Wine grape (Vitis vinifera) as well as precomputed predictions for protein subcellular localizations using protein sequences.