Factsheet for GSMUA_AchrUn_randomP25450_001

Subcellular Localization

min:

: max

Winner_takes_all: vacuole

Predictor Summary:

extracellular 3
endoplasmic reticulum 3
vacuole 4
plasma membrane 3
golgi 3
cytosol 3
plastid 2

Predictors

GFP

MS/MS

Papers

Winner Takes All:	vacuole
Any Predictor:	cytosol, plastid, secretory
BaCelLo:	secretory
EpiLoc:	cytosol
iPSORT:	plastid
MultiLoc:	cytosol
Plant-mPloc:	cytosol, plastid
PProwler:	secretory
TargetP:	secretory
YLoc:	vacuole

PPI

No PPI Data

Homology

Paralog

locus	Identity	Homology Identity

Ortholog

locus	Homology Species	Location	Identity	Homology Identity
GSMUA_Achr1P21820_001	Banana	cytosol	70.0	79.87
GSMUA_AchrUn_...	Banana	cytosol, plasma membrane	65.29	75.25
GSMUA_Achr8P30490_001	Banana	cytosol, unclear	65.88	73.44
CDY55242	Canola	cytosol	50.88	70.04
CDX68268	Canola	cytosol, extracellular	53.24	62.85
Solyc06g072120.2.1	Tomato	nucleus	54.41	62.5
CDY50642	Canola	cytosol	52.94	62.5
Bra003882.1-P	Field mustard	cytosol	52.65	62.15
CDY03641	Canola	cytosol	53.53	61.69
Bra032101.1-P	Field mustard	cytosol	52.94	61.64
CDY46144	Canola	cytosol	52.94	61.64
VIT_09s0002g00610.t01	Wine grape	cytosol	56.47	61.54
Bra008030.1-P	Field mustard	cytosol	53.53	61.49
CDY20307	Canola	cytosol	52.65	61.3
CDX72910	Canola	cytosol	52.65	61.3
CDX82152	Canola	cytosol	53.24	61.15
CDX96403	Canola	cytosol	52.35	60.96
PGSC0003DMT400069333	Potato	cytosol, mitochondrion	53.53	60.87
Solyc03g019780.2.1	Tomato	nucleus	53.24	60.74
PGSC0003DMT400039497	Potato	cytosol	53.24	60.33
AT1G72370.1	Thale cress	cytosol	52.65	60.07
Bra016062.1-P	Field mustard	cytosol	40.59	57.98
CDY42439	Canola	cytosol	40.0	52.11
AT3G04770.1	Thale cress	cytosol	43.24	44.28
GSMUA_Achr5P22560_001	Banana	cytosol	7.06	29.27

Protein Annotations

MapMan:17.1.3.1.1	Gene3D:3.40.50.10490	GO:GO:0000028	GO:GO:0003674	GO:GO:0003735	GO:GO:0005198
GO:GO:0005575	GO:GO:0005622	GO:GO:0005623	GO:GO:0005737	GO:GO:0005829	GO:GO:0005840
GO:GO:0006412	GO:GO:0008150	GO:GO:0008152	GO:GO:0009058	GO:GO:0009987	GO:GO:0015935
GO:GO:0016043	GO:GO:0019538	GO:GO:0022627	GO:GO:0030529	EnsemblPlantsGene:GSMUA_AchrUn_randomG25450_001	EnsemblPlants:GSMUA_AchrUn_randomP25450_001
EnsemblPlants:GSMUA_AchrUn_randomT25450_001	UniProt:M0UCA3	HAMAP:MF_03015	PFAM:PF00318	PRINTS:PR00395	ScanProsite:PS00963
PANTHER:PTHR11489	PANTHER:PTHR11489:SF15	InterPro:Ribosomal_S2	InterPro:Ribosomal_S2_CS	InterPro:Ribosomal_S2_euk	InterPro:Ribosomal_S2_euk/arc
InterPro:Ribosomal_S2_flav_dom_sf	SUPFAM:SSF52313	SignalP:SignalP-noTM	TIGRFAMs:TIGR01012	UniParc:UPI00029553CF	SEG:seg

Description

ribosomal protein S2, putative, expressed [Source:GMGC_GENE;Acc:GSMUA_AchrUn_randomG25450_001]

Coordinates

chrchrUn_random:+:125590658..125593443

Molecular Weight (calculated)

37149.3 Da

IEP (calculated)

4.895

GRAVY (calculated)

-0.017

Length

340 amino acids

Sequence
(BLAST)

001: NYSLSLSLSL SLSLSPSLSF LDARSALHYD VYLIARRLMD SSEKGFIIIS TTINYRSDLK YTSFFFVNVI SHFCYSGVHI INLGKTWEKL QLAARVIVAI
101: ENPQDIIVQS ARPYGQRAVL KFAQFTGAHP IAGRHTPGTF TNQLQTSFSE PRLLILTDPR TDHQPIKESA LGNIPTIAFC DTDSPMRYVD IGIPANNKGK
201: LSIGCLFWLL ARMVLQMRGT IPLGRKWEVM VDLFFYRDPE EAKEQEEAEA PVAPEFGAVP DYGAMVPNDQ WTTEQWMPDA AVPAGVPPVA GVEWTTGQAP
301: VAAEGWDAAA APPVEGVVSP GVPSGWEAAA PAAPAPSGWE

Best Arabidopsis Sequence Match ( AT1G72370.2 )
(BLAST)

001: MATNGSASSA QLSQKEADVR MMCAAEVHLG TKNCNYQMER YVFKRRNDGI YIFNLGKTWE KLQMAARVIV AIENPQDIIV QSARPYGQRA VLKFAQYTGA
101: NAIAGRHTPG TFTNQMQTSF SEPRLLILTD PRTDHQPIKE GALGNIPIIA FCDTDSPMRF VDIGIPANNK GKHSIGCLFW LLARMVLQMR GTIAAGQKWD
201: VMVDLFFYRE PEETKPEDED EAGPQAEYGA LPAPEYGMVG GDQWTTAQIP DAAWPGEGQA PISAAPAAAS WSDSADGGWE AAAPPSGAPA AGWE

Arabidopsis Description

RPSAA40S ribosomal protein SA [Source:UniProtKB/TrEMBL;Acc:A0A178WNA1]
SUBAcon: [cytosol]

Hydropathy Plot

About CropPAL

The Protein Annotated Locations Database (CropPAL) houses large scale proteomic and GFP localization data from published experimental studies in Soybean (Glycine max), Maize (Zea mays), Wheat (Triticum aestivum), Barley (Hordeum vulgare), Rice (Oryza sativa), Field mustard (Brassica rapa), Canola (Brassica napus), Sorghum (Sorghum bicolor), Potato (Solanum tuberosum), Tomato (Solanum lycopersicum), Banana (Musa acuminata) and Wine grape (Vitis vinifera) as well as precomputed predictions for protein subcellular localizations using protein sequences.