Factsheet for GSMUA_AchrUn_randomP19390_001

Subcellular Localization

min:

: max

Winner_takes_all: plasma membrane, cytosol

Predictor Summary:

nucleus 1
cytosol 5
plastid 1
mitochondrion 1

Predictors

GFP

MS/MS

Papers

plasma membrane: 21334471

msms PMID: 21334471 doi

A Vertommen, AL Møller, JH Cordewener, R Swennen, B Panis, C Finnie, AH America, SC Carpentier

Laboratory of Tropical Crop Improvement, Department of Biosystems, K.U. Leuven, Kasteelpark Arenberg 13, PO box 2455, B-3001 Heverlee, Belgium.

PPI

No PPI Data

Homology

Paralog

locus	Identity	Homology Identity

Ortholog

locus	Homology Species	Location	Identity	Homology Identity
GSMUA_Achr8P30490_001	Banana	cytosol, unclear	84.07	81.31
GSMUA_Achr1P21820_001	Banana	cytosol	80.68	79.87
CDY55242	Canola	cytosol	60.0	71.66
Solyc03g019780.2.1	Tomato	nucleus	69.49	68.79
PGSC0003DMT400039497	Potato	cytosol	69.15	68.0
Solyc06g072120.2.1	Tomato	nucleus	68.14	67.91
VIT_09s0002g00610.t01	Wine grape	cytosol	71.19	67.31
PGSC0003DMT400069333	Potato	cytosol, mitochondrion	67.8	66.89
Bra032101.1-P	Field mustard	cytosol	66.1	66.78
CDY46144	Canola	cytosol	66.1	66.78
Bra003882.1-P	Field mustard	cytosol	65.08	66.67
CDX68268	Canola	cytosol, extracellular	65.08	66.67
CDY50642	Canola	cytosol	65.08	66.67
CDY20307	Canola	cytosol	65.76	66.44
CDX82152	Canola	cytosol	66.44	66.22
CDY03641	Canola	cytosol	66.1	66.1
Bra008030.1-P	Field mustard	cytosol	66.1	65.88
AT1G72370.1	Thale cress	cytosol	66.1	65.44
GSMUA_AchrUn_...	Banana	vacuole	75.25	65.29
CDX72910	Canola	cytosol	64.41	65.07
CDX96403	Canola	cytosol	64.07	64.73
GSMUA_Achr5P22560_001	Banana	cytosol	16.95	60.98
Bra016062.1-P	Field mustard	cytosol	48.14	59.66
CDY42439	Canola	cytosol	46.78	52.87
AT3G04770.1	Thale cress	cytosol	57.97	51.51

Protein Annotations

MapMan:17.1.3.1.1	Gene3D:3.40.50.10490	GO:GO:0000028	GO:GO:0003674	GO:GO:0003735	GO:GO:0005198
GO:GO:0005575	GO:GO:0005622	GO:GO:0005623	GO:GO:0005737	GO:GO:0005829	GO:GO:0005840
GO:GO:0006412	GO:GO:0008150	GO:GO:0008152	GO:GO:0009058	GO:GO:0009987	GO:GO:0015935
GO:GO:0016043	GO:GO:0019538	GO:GO:0022627	GO:GO:0030529	EnsemblPlantsGene:GSMUA_AchrUn_randomG19390_001	EnsemblPlants:GSMUA_AchrUn_randomP19390_001
EnsemblPlants:GSMUA_AchrUn_randomT19390_001	UniProt:M0UAJ8	HAMAP:MF_03015	PFAM:PF00318	PRINTS:PR00395	ScanProsite:PS00962
ScanProsite:PS00963	PANTHER:PTHR11489	PANTHER:PTHR11489:SF15	InterPro:Ribosomal_S2	InterPro:Ribosomal_S2_CS	InterPro:Ribosomal_S2_euk
InterPro:Ribosomal_S2_euk/arc	InterPro:Ribosomal_S2_flav_dom_sf	SUPFAM:SSF52313	TIGRFAMs:TIGR01012	UniParc:UPI0002950E2F	SEG:seg

Description

40S ribosomal protein Sa-2 [Source:GMGC_GENE;Acc:GSMUA_AchrUn_randomG19390_001]

Coordinates

chrchrUn_random:+:93169006..93173113

Molecular Weight (calculated)

32288.6 Da

IEP (calculated)

4.815

GRAVY (calculated)

-0.229

Length

295 amino acids

Sequence
(BLAST)

001: MATRVLSQKE EDIQMMLSAA VHLGARNCDF QMERYVYKRR SDGVHIINLG KTWEKLRLAA RVIVAIENPQ DIIVQSARPY GQRAVLKFAQ YTGASPIAGR
101: HTPGTFTNQL QTSFSEPRLL ILTDPRTDHQ PIKESALGNI PTIAFCDTDS SMRYVDIGIP ANNKGKLSIG CLFWLLARMV LQMRGTIPLG RKWEVMVDLF
201: FYRDPEEAKE QEEEEAPVAP DYGAMVPNDQ WTTEQWMPDG GAVSSVEPPV TGVESTAGQA VPVGAEGWDV AAAPPVEAGA VAPGVPPAAA PTGWE

Best Arabidopsis Sequence Match ( AT3G04770.2 )
(BLAST)

001: MAANGVATAG RQVSEKEADI QMMLSADVHL GTKNCNYQME RYVFKRRDDG IYIINLGKTW DKLQMAARVI VAIENPKDII VQSARPYGQR AVLKFAQYTG
101: VNAIAGRHTP GTFTNQMQTS FSEPRLLILT DPRTDHQPIK EGALGNIPTI AFCDTDSPMG FVDIGIPANN KGKHSIGCLF WLLARMVLQM RGTILAAQKW
201: DVMVDLFFYR EPEEAKQEGD EEAEVQADYG MVGGDQWTTA QISDAAWSGE VEQPISAAPA VGVTVAAGWE AASVPAAGWE

Arabidopsis Description

RPSAb40S ribosomal protein SA [Source:UniProtKB/TrEMBL;Acc:F4J4W3]
SUBAcon: [cytosol]

Hydropathy Plot

About CropPAL

The Protein Annotated Locations Database (CropPAL) houses large scale proteomic and GFP localization data from published experimental studies in Soybean (Glycine max), Maize (Zea mays), Wheat (Triticum aestivum), Barley (Hordeum vulgare), Rice (Oryza sativa), Field mustard (Brassica rapa), Canola (Brassica napus), Sorghum (Sorghum bicolor), Potato (Solanum tuberosum), Tomato (Solanum lycopersicum), Banana (Musa acuminata) and Wine grape (Vitis vinifera) as well as precomputed predictions for protein subcellular localizations using protein sequences.