CropPAL

Subcellular Localization

min:

: max

Winner_takes_all: extracellular, cytosol

Predictor Summary:

nucleus 1
cytosol 3
mitochondrion 1

Predictors

GFP

MS/MS

Papers

Winner Takes All:	cytosol, extracellular
Any Predictor:	cytosol, nucleus
BaCelLo:	nucleus
MultiLoc:	cytosol
PProwler:	mitochondrion
WoLF PSORT:	cytosol
YLoc:	cytosol

extracellular: 28052459

msms PMID: 28052459 doi

A Ostendorp, S Pahlow, L Krüßel, P Hanhart, MY Garbe, J Deke, P Giavalisco, J Kehr

Max Planck Institute of Molecular Plant Physiology, am Mühlenberg 1, Potsdam, 14476, Germany., Molecular Plant Genetics, University Hamburg, Biocenter Klein Flottbek, Ohnhorststr. 18, Hamburg, 22609, Germany.

PPI

No PPI Data

Homology

Paralog

locus	Identity	Homology Identity

Ortholog

locus	Homology Species	Location	Identity	Homology Identity
CDY50642	Canola	cytosol	99.65	99.65
Bra003882.1-P	Field mustard	cytosol	98.96	98.96
CDX72910	Canola	cytosol	94.44	93.15
CDX96403	Canola	cytosol	94.1	92.81
CDX82152	Canola	cytosol	94.1	91.55
CDY03641	Canola	cytosol	93.4	91.19
CDY46144	Canola	cytosol	88.54	87.33
CDY20307	Canola	cytosol	88.19	86.99
CDY55242	Canola	cytosol	74.31	86.64
AT1G72370.1	Thale cress	cytosol	89.58	86.58
HORVU6Hr1G031720.2	Barley	cytosol	21.53	78.48
Solyc03g019780.2.1	Tomato	nucleus	73.26	70.81
Solyc06g072120.2.1	Tomato	nucleus	72.22	70.27
PGSC0003DMT400069333	Potato	cytosol, mitochondrion	72.57	69.9
PGSC0003DMT400039497	Potato	cytosol	72.57	69.67
TraesCS2A01G168300.1	Wheat	cytosol, nucleus, plastid	72.57	68.75
TraesCS2B01G194400.1	Wheat	cytosol, golgi, unclear	72.57	68.75
TraesCS2D01G175700.1	Wheat	cytosol	72.57	68.75
VIT_09s0002g00610.t01	Wine grape	cytosol	74.31	68.59
KRH06257	Soybean	nucleus	73.61	68.17
TraesCS4A01G006000.1	Wheat	cytosol	70.83	68.0
KRH47681	Soybean	endoplasmic reticulum, nucleus	72.57	67.42
Os03t0402400-00	Rice	nucleus	43.4	67.2
Zm00001d006871_P001	Maize	cytosol, extracellular, plastid	71.53	67.1
GSMUA_Achr8P30490_001	Banana	cytosol, unclear	70.49	66.56
KRH13835	Soybean	cytosol	71.53	66.24
GSMUA_Achr1P21820_001	Banana	cytosol	68.4	66.11
Zm00001d048256_P002	Maize	plasma membrane	70.49	65.91
Zm00001d048253_P001	Maize	plastid	70.49	65.91
TraesCS4D01G298000.1	Wheat	cytosol	70.14	65.58
TraesCS4B01G299100.1	Wheat	cytosol, extracellular, golgi, nucleus, unclear	70.14	65.58
Zm00001d048346_P001	Maize	plastid	70.49	65.48
Zm00001d027919_P001	Maize	plastid	70.14	65.16
GSMUA_AchrUn_...	Banana	cytosol, plasma membrane	66.67	65.08
CDY42439	Canola	cytosol	54.17	59.77
KRH43602	Soybean	endoplasmic reticulum	72.22	54.88
GSMUA_AchrUn_...	Banana	vacuole	62.85	53.24
Zm00001d027527_P001	Maize	mitochondrion	69.79	53.17
GSMUA_Achr5P22560_001	Banana	cytosol	14.24	50.0
OQU92440	Sorghum	plastid	25.35	39.89

Protein Annotations

MapMan:17.1.3.1.1	Gene3D:3.40.50.10490	GO:A0A078BZC2	EnsemblPlants:CDX68268	ProteinID:CDX68268	ProteinID:CDX68268.1
GO:GO:0000028	GO:GO:0003674	GO:GO:0003735	GO:GO:0005198	GO:GO:0005575	GO:GO:0005622
GO:GO:0005623	GO:GO:0005737	GO:GO:0005829	GO:GO:0005840	GO:GO:0006412	GO:GO:0008150
GO:GO:0008152	GO:GO:0009058	GO:GO:0009987	GO:GO:0015935	GO:GO:0016043	GO:GO:0019538
GO:GO:0022627	EnsemblPlantsGene:GSBRNA2T00099549001	HAMAP:MF_03015	PFAM:PF00318	PRINTS:PR00395	ScanProsite:PS00962
ScanProsite:PS00963	PANTHER:PTHR11489	PANTHER:PTHR11489:SF15	InterPro:Ribosomal_S2	InterPro:Ribosomal_S2_CS	InterPro:Ribosomal_S2_euk
InterPro:Ribosomal_S2_euk/arc	InterPro:Ribosomal_S2_flav_dom_sf	SUPFAM:SSF52313	TIGRFAMs:TIGR01012	UniParc:UPI0004EDE298	SEG:seg

Description

BnaA07g23080D

Coordinates

chrLK031787:+:4719683..4721486

Molecular Weight (calculated)

31584.5 Da

IEP (calculated)

4.884

GRAVY (calculated)

-0.300

Length

288 amino acids

Sequence
(BLAST)

001: MATQGSAQKE ADIKMMCAAE VHLGTKNCNY QMERYVFKRR NDGIYIFNLG KTWEKLQMAA RVIVAIENPQ DIIVQSARPY GQRAVLKFAQ YTGANAIAGR
101: HTPGTFTNQM QTSFSEPRLL ILTDPRTDHQ PIKEGALGNI PIIAFCDTDS PMRFVDIGIP ANNKGKHSIG CLFWLLARMV LQMRGTIRPA QKWDVMVDLF
201: FYREPEEAKP EDEDEVAPQA EFGLPAPEYG GDQWTTAAIP DAAWPGEAQA PISAAPAAAS WNDSTVAPAA EGGWDAAVPP TTAAAGWE

Best Arabidopsis Sequence Match ( AT1G72370.1 )
(BLAST)

001: MATNGSASSA QLSQKEADVR MMCAAEVHLG TKNCNYQMER YVFKRRNDGI YIFNLGKTWE KLQMAARVIV AIENPQDIIV QSARPYGQRA VLKFAQYTGA
101: NAIAGRHTPG TFTNQMQTSF SEPRLLILTD PRTDHQPIKE GALGNIPIIA FCDTDSPMRF VDIGIPANNK GKHSIGCLFW LLARMVLQMR GTIAAGQKWD
201: VMVDLFFYRE PEETKPEDED EAGPQAEYGA LPAPEYGMVG GDQWTTAQIP DAAWPGEGQA PISAAPAAAS WSDSAAAPAD GGWEAAAPPS GAPAAGWE

Arabidopsis Description

RPSAA40S ribosomal protein SA [Source:UniProtKB/TrEMBL;Acc:A0A178WNA1]
SUBAcon: [cytosol]

Hydropathy Plot

About CropPAL

The Protein Annotated Locations Database (CropPAL) houses large scale proteomic and GFP localization data from published experimental studies in Soybean (Glycine max), Maize (Zea mays), Wheat (Triticum aestivum), Barley (Hordeum vulgare), Rice (Oryza sativa), Field mustard (Brassica rapa), Canola (Brassica napus), Sorghum (Sorghum bicolor), Potato (Solanum tuberosum), Tomato (Solanum lycopersicum), Banana (Musa acuminata) and Wine grape (Vitis vinifera) as well as precomputed predictions for protein subcellular localizations using protein sequences.