CropPAL

Subcellular Localization

min:

: max

Winner_takes_all: mitochondrion

Predictor Summary:

plastid 1
mitochondrion 9
cytosol 1

Predictors

GFP

MS/MS

Papers

nucleus: 21132161
mitochondrion: 21766870
endoplasmic reticulum: 27224218
mitochondrion: 27780359
endoplasmic reticulum: 28499913

msms PMID: 21132161 doi

B Cooper, KB Campbell, J Feng, WM Garrett, R Frederick

Soybean Genomics and Improvement Laboratory, USDA-ARS, Beltsville, MD 20705, USA. bret.cooper@ars.usda.gov

msms PMID: 27780359 doi

G Mustafa, S Komatsu

Graduate School of Life and Environmental Science, University of Tsukuba , Tsukuba 305-8572, Japan., National Institute of Crop Science, National Agriculture and Food Research Organization , Tsukuba 305-8518, Japan.

msms PMID: 21766870 doi

S Komatsu, A Yamamoto, T Nakamura, MZ Nouri, Y Nanjo, K Nishizawa, K Furukawa

National Institute of Crop Science, Tsukuba 305-8518, Japan. skomatsu@affrc.go.jp

msms PMID: 28499913 doi

S Komatsu, X Wang, X Yin, Y Nanjo, H Ohyanagi, K Sakata

Department of Life Science and Informatics, Maebashi Institute of Technology, Maebashi 371-0816, Japan. Electronic address: ksakata@maebashi-it.ac.jp., Institute of Crop Science, National Agriculture and Food Research Organization, Tsukuba 305-8518, Japan., Institute of Crop Science, National Agriculture and Food Research Organization, Tsukuba 305-8518, Japan; Faculty of Life and Environmental Sciences, University of Tsukuba, Tsukuba 305-8572, Japan., Institute of Crop Science, National Agriculture and Food Research Organization, Tsukuba 305-8518, Japan; Faculty of Life and Environmental Sciences, University of Tsukuba, Tsukuba 305-8572, Japan. Electronic address: komatsu.setsuko.fu@u.tsukuba.ac.jp., King Abdullah University of Science and Technology (KAUST), Computational Bioscience Research Center (CBRC), Thuwal 23955-6900, Saudi Arabia.

msms PMID: 27224218 doi

X Wang, S Komatsu

Graduate School of Life and Environmental Sciences, University of Tsukuba , Tsukuba 305-8572, Japan., National Institute of Crop Science, National Agriculture and Food Research Organization , Tsukuba 305-8518, Japan.

PPI

No PPI Data

Homology

Paralog

locus	Identity	Homology Identity

Ortholog

locus	Homology Species	Location	Identity	Homology Identity
Bra028469.1-P	Field mustard	cytosol	66.79	92.04
KRH07075	Soybean	cytosol	77.62	91.88
CDY20051	Canola	cytosol	66.06	91.5
CDY48359	Canola	cytosol	66.06	91.5
CDY00158	Canola	cytosol	57.76	78.82
AT5G40650.1	Thale cress	mitochondrion	79.06	78.21
CDX83688	Canola	mitochondrion	78.34	77.78
CDY13709	Canola	mitochondrion	78.7	77.58
Bra025272.1-P	Field mustard	mitochondrion	78.34	77.22
Bra033006.1-P	Field mustard	mitochondrion	78.34	77.22
CDY34152	Canola	mitochondrion	78.34	77.22
AT3G27380.1	Thale cress	mitochondrion	77.62	77.06
KRH33590	Soybean	cytosol	36.46	58.72
VIT_14s0219g00150.t01	Wine grape	mitochondrion	79.42	54.86
GSMUA_Achr10P...	Banana	cytosol, nucleus, plastid	15.88	45.83

Protein Annotations

KEGG:00020+1.3.5.1	KEGG:00190+1.3.5.1	KEGG:00650+1.3.5.1	KEGG:00720+1.3.5.1	Gene3D:1.10.1060.10	EntrezGene:100815377
MapMan:2.3.6.1.2	InterPro:2Fe-2S_ferredoxin-like_sf	InterPro:2Fe-2S_ferredoxin-type	InterPro:2Fe2S_fd_BS	Gene3D:3.10.20.30	InterPro:4Fe4S_Fe-S-bd
InterPro:4Fe4S_Fe_S_CS	UniProt:A0A0R4J5X9	EMBL:ACUP02011943	InterPro:Beta-grasp_dom_sf	EnsemblPlantsGene:GLYMA_19G080600	GO:GO:0003674
GO:GO:0003824	GO:GO:0005488	GO:GO:0005575	GO:GO:0005622	GO:GO:0005623	GO:GO:0005737
GO:GO:0005739	GO:GO:0005743	GO:GO:0006091	GO:GO:0006099	GO:GO:0008150	GO:GO:0008152
GO:GO:0008177	GO:GO:0009055	GO:GO:0009060	GO:GO:0009987	GO:GO:0016020	GO:GO:0016491
GO:GO:0022900	GO:GO:0022904	GO:GO:0046872	GO:GO:0051536	GO:GO:0051537	GO:GO:0051538
GO:GO:0051539	GO:GO:0055114	InterPro:Helical_ferredxn	InterPro:IPR001041	InterPro:IPR009051	InterPro:IPR012675
InterPro:IPR017896	EnsemblPlants:KRG94380	ProteinID:KRG94380	ProteinID:KRG94380.1	PFAM:PF13085	PFAM:PF13534
ScanProsite:PS00197	ScanProsite:PS00198	PFscan:PS51085	PFscan:PS51379	PANTHER:PTHR11921	PANTHER:PTHR11921:SF29
MetaCyc:PWY-3781	MetaCyc:PWY-4302	MetaCyc:PWY-561	MetaCyc:PWY-5690	MetaCyc:PWY-6728	MetaCyc:PWY-6969
MetaCyc:PWY-7254	MetaCyc:PWY-7279	SUPFAM:SSF46548	SUPFAM:SSF54292	InterPro:Succ_DH/fum_Rdtase_Fe-S	InterPro:Succ_DH/fum_Rdtase_N
TIGRFAMs:TIGR00384	UniParc:UPI000189D21C	:	:	:	:

Description

hypothetical protein

Coordinates

chr19:+:29083739..29087120

Molecular Weight (calculated)

31161.7 Da

IEP (calculated)

8.738

GRAVY (calculated)

-0.466

Length

277 amino acids

Sequence
(BLAST)

001: MATGLLKRAA QRLPSSPGFK LALLRAHASE AQAQQVEPKA RGTPTLKTFQ IYRWSPENPS KPELKDYQIN LKECGPMVLD ALIKIKNEID PSLTFRRSCR
101: EGICGSCAMN IDGCNGLACL TKIPSEGAAT TITPLPHMFV IKDLVVDMTN FYNQYKSIEP WLKRKNPPEP GKEILQSKKE REKLDGMYEC ILCACCSTSC
201: PSYWWNPESY LGPAALLHAN RWISDSRDEY TKERLDAIND EFKLYRCHTI LNCARACPKG LNPGKQISHI KSLQPKA

Best Arabidopsis Sequence Match ( AT5G40650.1 )
(BLAST)

001: MAFGLIGRVV GTKSSRLSTA ARLIPARWTS TGSEAQSKAS TGGGGASLKT FQIYRWNPDN PGKPELQDYK IDLKDCGPMV LDALIKIKNE MDPSLTFRRS
101: CREGICGSCA MNIDGCNGLA CLTKIESGSK ETTITPLPHM FVIKDLVVDM TNFYNQYKSI EPWLKRKNPA SVPGKEILQS KKDRAKLDGM YECILCACCS
201: TSCPSYWWNP ESYLGPAALL HANRWISDSR DEYTKERLEA IDDEFKLYRC HTILNCARAC PKGLNPGKQI THIKQLQKSG

Arabidopsis Description

SDH2-2Succinate dehydrogenase [ubiquinone] iron-sulfur subunit 2, mitochondrial [Source:UniProtKB/Swiss-Prot;Acc:Q8LB02]
SUBAcon: [mitochondrion]

Hydropathy Plot

About CropPAL

The Protein Annotated Locations Database (CropPAL) houses large scale proteomic and GFP localization data from published experimental studies in Soybean (Glycine max), Maize (Zea mays), Wheat (Triticum aestivum), Barley (Hordeum vulgare), Rice (Oryza sativa), Field mustard (Brassica rapa), Canola (Brassica napus), Sorghum (Sorghum bicolor), Potato (Solanum tuberosum), Tomato (Solanum lycopersicum), Banana (Musa acuminata) and Wine grape (Vitis vinifera) as well as precomputed predictions for protein subcellular localizations using protein sequences.