Factsheet for Bra025272.1-P

Subcellular Localization

min:

: max

Winner_takes_all: mitochondrion

Predictor Summary:

plastid 2
mitochondrion 9
cytosol 1

Predictors

GFP

MS/MS

Papers

PPI

No PPI Data

Homology

Paralog

locus	Identity	Homology Identity

Ortholog

locus	Homology Species	Location	Identity	Homology Identity
CDY13709	Canola	mitochondrion	98.22	98.22
CDX83688	Canola	mitochondrion	97.51	98.21
Bra028469.1-P	Field mustard	cytosol	67.97	95.02
Bra033006.1-P	Field mustard	mitochondrion	92.53	92.53
Bra039082.1-P	Field mustard	mitochondrion	72.24	90.22
PGSC0003DMT400064279	Potato	cytosol	35.94	89.38
KRH07075	Soybean	cytosol	68.68	82.48
KRG94380	Soybean	mitochondrion	77.22	78.34
Solyc02g093680.2.1	Tomato	extracellular, mitochondrion, plastid	75.44	77.37
PGSC0003DMT400032862	Potato	mitochondrion	75.44	77.37
Zm00001d011333_P001	Maize	cytosol, golgi, mitochondrion	32.74	66.19
Solyc02g092730.2.1	Tomato	cytosol, nucleus	59.43	65.75
VIT_14s0219g00150.t01	Wine grape	mitochondrion	77.58	54.36
Zm00001d045148_P001	Maize	mitochondrion	26.69	52.45
Bra031877.1-P	Field mustard	mitochondrion	55.16	50.65
HORVU7Hr1G074890.6	Barley	mitochondrion	60.5	48.57
Zm00001d049649_P001	Maize	mitochondrion	69.39	47.91
Zm00001d035136_P001	Maize	mitochondrion	69.04	47.78
Os08t0120000-05	Rice	mitochondrion	58.72	47.14
HORVU5Hr1G057270.1	Barley	cytosol, mitochondrion, plastid	15.3	46.74
OQU79812	Sorghum	mitochondrion	58.01	46.31
TraesCS7A01G314000.1	Wheat	mitochondrion	60.14	46.17
TraesCS7B01G214900.1	Wheat	mitochondrion	59.79	45.9
TraesCS7D01G311200.1	Wheat	mitochondrion	59.79	45.9
Os09t0370200-01	Rice	mitochondrion	12.46	12.32

Protein Annotations

KEGG:00020+1.3.5.1	KEGG:00190+1.3.5.1	KEGG:00650+1.3.5.1	KEGG:00720+1.3.5.1	Gene3D:1.10.1060.10	MapMan:2.3.6.1.2
InterPro:2Fe-2S_ferredoxin-like_sf	InterPro:2Fe-2S_ferredoxin-type	InterPro:2Fe2S_fd_BS	Gene3D:3.10.20.30	InterPro:4Fe4S_Fe-S-bd	InterPro:4Fe4S_Fe_S_CS
InterPro:Beta-grasp_dom_sf	EnsemblPlantsGene:Bra025272	EnsemblPlants:Bra025272.1	EnsemblPlants:Bra025272.1-P	GO:GO:0003674	GO:GO:0003824
GO:GO:0005488	GO:GO:0005575	GO:GO:0005622	GO:GO:0005623	GO:GO:0005737	GO:GO:0005739
GO:GO:0005743	GO:GO:0006091	GO:GO:0006099	GO:GO:0008150	GO:GO:0008152	GO:GO:0008177
GO:GO:0009055	GO:GO:0009987	GO:GO:0016020	GO:GO:0016491	GO:GO:0022900	GO:GO:0046872
GO:GO:0051536	GO:GO:0051537	GO:GO:0051538	GO:GO:0051539	GO:GO:0055114	InterPro:Helical_ferredxn
InterPro:IPR001041	InterPro:IPR009051	InterPro:IPR012675	InterPro:IPR017896	UniProt:M4E916	PFAM:PF13085
PFAM:PF13534	ScanProsite:PS00197	ScanProsite:PS00198	PFscan:PS51085	PFscan:PS51379	PANTHER:PTHR11921
PANTHER:PTHR11921:SF29	SUPFAM:SSF46548	SUPFAM:SSF54292	InterPro:Succ_DH/fum_Rdtase_Fe-S	InterPro:Succ_DH/fum_Rdtase_N	TIGRFAMs:TIGR00384
UniParc:UPI000253F5A6	SEG:seg	:	:	:	:

Description

AT5G40650 (E=1e-146) SDH2-2 | SDH2-2; electron carrier/ succinate dehydrogenase

Coordinates

chrA06:+:22469601..22470535

Molecular Weight (calculated)

31553.1 Da

IEP (calculated)

8.575

GRAVY (calculated)

-0.483

Length

281 amino acids

Sequence
(BLAST)

001: MSTGLIGRLV RTKPSRLTTS ARLIPSRCTA SVTEPESKAS SGVGGGKASN FKTFQIYRWN PDNPSKPELQ DYKIDLKDCG PMVLDALIKI KNEMDPSLTF
101: RRSCREGICG SCAMNIDGCN GLACLTKIEE GAKETTITPL PHMFVIKDLV VDMTNFYNQY KSIEPWLKRK NPASEPGKEI LQSKKDRAKL DGMYECILCA
201: CCSTSCPSYW WNPESYLGPA ALLHANRWIS DSRDEYTKER LEAIDDEFKL YRCHTILNCA RACPKGLNPG KQIAHIKQLQ R

Best Arabidopsis Sequence Match ( AT5G40650.1 )
(BLAST)

001: MAFGLIGRVV GTKSSRLSTA ARLIPARWTS TGSEAQSKAS TGGGGASLKT FQIYRWNPDN PGKPELQDYK IDLKDCGPMV LDALIKIKNE MDPSLTFRRS
101: CREGICGSCA MNIDGCNGLA CLTKIESGSK ETTITPLPHM FVIKDLVVDM TNFYNQYKSI EPWLKRKNPA SVPGKEILQS KKDRAKLDGM YECILCACCS
201: TSCPSYWWNP ESYLGPAALL HANRWISDSR DEYTKERLEA IDDEFKLYRC HTILNCARAC PKGLNPGKQI THIKQLQKSG

Arabidopsis Description

SDH2-2Succinate dehydrogenase [ubiquinone] iron-sulfur subunit 2, mitochondrial [Source:UniProtKB/Swiss-Prot;Acc:Q8LB02]
SUBAcon: [mitochondrion]

Hydropathy Plot

About CropPAL

The Protein Annotated Locations Database (CropPAL) houses large scale proteomic and GFP localization data from published experimental studies in Soybean (Glycine max), Maize (Zea mays), Wheat (Triticum aestivum), Barley (Hordeum vulgare), Rice (Oryza sativa), Field mustard (Brassica rapa), Canola (Brassica napus), Sorghum (Sorghum bicolor), Potato (Solanum tuberosum), Tomato (Solanum lycopersicum), Banana (Musa acuminata) and Wine grape (Vitis vinifera) as well as precomputed predictions for protein subcellular localizations using protein sequences.