Factsheet for Zm00001d035136_P001

Subcellular Localization

min:

: max

Winner_takes_all: mitochondrion

Predictor Summary:

plastid 1
mitochondrion 6
cytosol 1

Predictors

GFP

MS/MS

Papers

PPI

No PPI Data

Homology

Paralog

locus	Identity	Homology Identity

Ortholog

locus	Homology Species	Location	Identity	Homology Identity
Zm00001d049649_P001	Maize	mitochondrion	95.07	94.84
PGSC0003DMT400064279	Potato	cytosol	23.89	85.84
CDX67470	Canola	cytosol, endoplasmic reticulum, extracellular, golgi, mitochondrion, plasma membrane, plastid, vacuole	18.72	85.39
Zm00001d045148_P001	Maize	mitochondrion	29.8	84.62
Bra028469.1-P	Field mustard	cytosol	41.13	83.08
Zm00001d011333_P001	Maize	cytosol, golgi, mitochondrion	26.6	77.7
PGSC0003DMT400032862	Potato	mitochondrion	49.01	72.63
Solyc02g093680.2.1	Tomato	extracellular, mitochondrion, plastid	48.77	72.26
AT5G40650.1	Thale cress	mitochondrion	48.03	69.64
Bra039082.1-P	Field mustard	mitochondrion	38.42	69.33
AT3G27380.1	Thale cress	mitochondrion	47.54	69.18
Bra033006.1-P	Field mustard	mitochondrion	47.78	69.04
Bra025272.1-P	Field mustard	mitochondrion	47.78	69.04
Solyc02g092730.2.1	Tomato	cytosol, nucleus	39.9	63.78
CDX67469	Canola	mitochondrion	16.01	57.02
VIT_14s0219g00150.t01	Wine grape	mitochondrion	50.74	51.37
KRH33590	Soybean	cytosol	20.69	48.84
Zm00001d005663_P001	Maize	mitochondrion	36.21	47.88
CDY11704	Canola	cytosol	7.39	46.15
GSMUA_Achr7P02810_001	Banana	extracellular, vacuole	15.52	41.45

Protein Annotations

KEGG:00020+1.3.5.1	KEGG:00190+1.3.5.1	KEGG:00650+1.3.5.1	KEGG:00720+1.3.5.1	Gene3D:1.10.1060.10	EntrezGene:100216648
MapMan:17.7.1.2.12	MapMan:2.3.6.1.2	InterPro:2Fe-2S_ferredoxin-like_sf	InterPro:2Fe-2S_ferredoxin-type	InterPro:2Fe2S_fd_BS	Gene3D:3.10.20.30
Gene3D:4.10.830.10	InterPro:4Fe4S_Fe-S-bd	InterPro:4Fe4S_Fe_S_CS	UniProt:A0A1D6LEN4	ProteinID:AQK78408.1	InterPro:Beta-grasp_dom_sf
GO:GO:0003674	GO:GO:0003735	GO:GO:0003824	GO:GO:0005198	GO:GO:0005488	GO:GO:0005575
GO:GO:0005622	GO:GO:0005623	GO:GO:0005737	GO:GO:0005739	GO:GO:0005743	GO:GO:0005840
GO:GO:0006091	GO:GO:0006099	GO:GO:0006412	GO:GO:0008150	GO:GO:0008152	GO:GO:0008177
GO:GO:0009055	GO:GO:0009058	GO:GO:0009987	GO:GO:0016020	GO:GO:0016491	GO:GO:0019538
GO:GO:0022900	GO:GO:0046872	GO:GO:0051536	GO:GO:0051537	GO:GO:0051538	GO:GO:0051539
GO:GO:0055114	InterPro:Helical_ferredxn	InterPro:IPR001041	InterPro:IPR009051	InterPro:IPR012675	InterPro:IPR017896
PFAM:PF00253	PFAM:PF13085	ScanProsite:PS00197	ScanProsite:PS00198	ScanProsite:PS00527	PFscan:PS51085
PFscan:PS51379	PANTHER:PTHR11921	PANTHER:PTHR11921:SF29	InterPro:Ribosomal_S14	InterPro:Ribosomal_S14_CS	SUPFAM:SSF46548
SUPFAM:SSF54292	SUPFAM:SSF57716	InterPro:Succ_DH/fum_Rdtase_Fe-S	InterPro:Succ_DH/fum_Rdtase_N	TIGRFAMs:TIGR00384	UniParc:UPI000842E08E
EnsemblPlantsGene:Zm00001d035136	EnsemblPlants:Zm00001d035136_P001	EnsemblPlants:Zm00001d035136_T001	SEG:seg	:	:

Description

succinate dehydrogenase7 succinate dehydrogenase7

Coordinates

chr6:-:6620118..6623924

Molecular Weight (calculated)

46100.0 Da

IEP (calculated)

10.211

GRAVY (calculated)

-0.542

Length

406 amino acids

Sequence
(BLAST)

001: MAAAALLRRS PAARALLSPA LSSRLVASKP HSSSPTQPPP EAKGASSTKT FSIYRWDPDS PSTKPHLRDY QVDLSDCGPM VLDALLKIKN EQDPSLTFRR
101: SCREGICGSC AMNIDGDNGL ACLTKISSAS SASTVSPLPH MFVIKDLVVD MTNFYNQYKS VEPWLKRKDP PPQLGKEVPQ TKADRAKLDG MYECILCACC
201: STSCPSYWWN PEEYLGPAAL LHANRLPLWG TLMKPKPNMF MHLQARGYHG VSEKRNLRDH KRRLLAEKFE LRGKLYKAVC RDPDLPLDMR EKFRYKLSKL
301: PRNSSMTRLR NRCIFTGRSR AVYKKFRMSR IVFRTLANKG ELMGVKKASW WIQDSRDQFT KERLDAINDE FKLYRCHTIK NCTHACPKGL NPAKQIDTIK
401: KLQLDA

Best Arabidopsis Sequence Match ( AT5G40650.2 )
(BLAST)

001: MAFGLIGRVV GTKSSRLSTA ARLIPARWTS TGSEAQSKAS TGGGGASLKT FQIYRWNPDN PGKPELQDYK IDLKDCGPMV LDALIKIKNE MDPSLTFRRS
101: CREGICGSCA MNIDGCNGLA CLTKIESGSK ETTITPLPHM FVIKDLVVDM TNFYNQYKSI EPWLKRKNPA SVPGKEILQS KKDRAKLDGM YECILCACCS
201: TSCPSYWWNP ESYLGPAALL HANR

Arabidopsis Description

SDH2-2Succinate dehydrogenase [ubiquinone] iron-sulfur subunit 2, mitochondrial [Source:UniProtKB/Swiss-Prot;Acc:Q8LB02]
SUBAcon: [mitochondrion]

Hydropathy Plot

About CropPAL

The Protein Annotated Locations Database (CropPAL) houses large scale proteomic and GFP localization data from published experimental studies in Soybean (Glycine max), Maize (Zea mays), Wheat (Triticum aestivum), Barley (Hordeum vulgare), Rice (Oryza sativa), Field mustard (Brassica rapa), Canola (Brassica napus), Sorghum (Sorghum bicolor), Potato (Solanum tuberosum), Tomato (Solanum lycopersicum), Banana (Musa acuminata) and Wine grape (Vitis vinifera) as well as precomputed predictions for protein subcellular localizations using protein sequences.