CropPAL

Subcellular Localization

min:

: max

Winner_takes_all: extracellular, endoplasmic reticulum, vacuole, mitochondrion, plastid, cytosol, plasma membrane, golgi

Predictor Summary:

nucleus 1
plastid 2
cytosol 1
mitochondrion 2
extracellular 1
endoplasmic reticulum 1
vacuole 1
plasma membrane 1
golgi 1

Predictors

GFP

MS/MS

Papers

Winner Takes All:	cytosol, mitochondrion, plastid, secretory
Any Predictor:	cytosol, mitochondrion, nucleus, secretory
BaCelLo:	nucleus
iPSORT:	plastid
MultiLoc:	cytosol
PProwler:	mitochondrion
TargetP:	secretory
WoLF PSORT:	plastid
YLoc:	mitochondrion

PPI

No PPI Data

Homology

Paralog

locus	Identity	Homology Identity

Ortholog

locus	Homology Species	Location	Identity	Homology Identity
GSMUA_Achr11P...	Banana	cytosol, extracellular	66.29	61.46
CDY11705	Canola	plastid	56.18	48.08
CDY06159	Canola	cytosol	66.29	44.03
CDY20051	Canola	cytosol	96.63	43.0
CDY48359	Canola	cytosol	96.63	43.0
GSMUA_Achr11P...	Banana	cytosol	85.39	37.81
GSMUA_Achr7P02810_001	Banana	extracellular, vacuole	52.81	30.92
CDX83688	Canola	mitochondrion	96.63	30.82
CDY13709	Canola	mitochondrion	96.63	30.61
CDY34152	Canola	mitochondrion	96.63	30.61
CDY00158	Canola	cytosol	69.66	30.54
Solyc02g092730.2.1	Tomato	cytosol, nucleus	82.02	28.74
Solyc02g093680.2.1	Tomato	extracellular, mitochondrion, plastid	87.64	28.47
PGSC0003DMT400032862	Potato	mitochondrion	86.52	28.1
GSMUA_Achr11P...	Banana	mitochondrion	84.27	26.5
Zm00001d011333_P001	Maize	cytosol, golgi, mitochondrion	40.45	25.9
VIT_14s0219g00150.t01	Wine grape	mitochondrion	91.01	20.2
CDY37805	Canola	mitochondrion	66.29	19.28
CDY33981	Canola	mitochondrion	66.29	19.28
Zm00001d035136_P001	Maize	mitochondrion	85.39	18.72
Zm00001d049649_P001	Maize	mitochondrion	85.39	18.67
GSMUA_Achr7P02800_001	Banana	mitochondrion	33.71	14.56
HORVU7Hr1G074890.6	Barley	mitochondrion	50.56	12.86
TraesCS7A01G314000.1	Wheat	mitochondrion	50.56	12.3
TraesCS7B01G214900.1	Wheat	mitochondrion	50.56	12.3
TraesCS7D01G311200.1	Wheat	mitochondrion	50.56	12.3
Os08t0120000-05	Rice	mitochondrion	48.31	12.29
OQU79812	Sorghum	mitochondrion	48.31	12.22
KRH33590	Soybean	cytosol	10.11	5.23
Os09t0370200-01	Rice	mitochondrion	10.11	3.17
CDY11704	Canola	cytosol	2.25	3.08
PGSC0003DMT400064279	Potato	cytosol	3.37	2.65
HORVU5Hr1G057270.1	Barley	cytosol, mitochondrion, plastid	0.0	0.0
Zm00001d045148_P001	Maize	mitochondrion	0.0	0.0
CDX67469	Canola	mitochondrion	0.0	0.0

Protein Annotations

KEGG:00020+1.3.5.1	KEGG:00190+1.3.5.1	KEGG:00650+1.3.5.1	KEGG:00720+1.3.5.1	Gene3D:1.10.1060.10	MapMan:2.3.6.1.2
InterPro:4Fe4S_Fe-S-bd	InterPro:4Fe4S_Fe_S_CS	GO:A0A078BS81	EnsemblPlants:CDX67470	ProteinID:CDX67470	ProteinID:CDX67470.1
GO:GO:0003674	GO:GO:0003824	GO:GO:0005488	GO:GO:0006091	GO:GO:0006099	GO:GO:0008150
GO:GO:0008152	GO:GO:0009987	GO:GO:0016491	GO:GO:0051536	GO:GO:0055114	EnsemblPlantsGene:GSBRNA2T00098574001
InterPro:Helical_ferredxn	InterPro:IPR009051	InterPro:IPR017896	PFAM:PF13534	ScanProsite:PS00198	PFscan:PS51379
PANTHER:PTHR11921	PANTHER:PTHR11921:SF29	MetaCyc:PWY-3781	MetaCyc:PWY-4302	MetaCyc:PWY-561	MetaCyc:PWY-5690
MetaCyc:PWY-6728	MetaCyc:PWY-6969	MetaCyc:PWY-7254	MetaCyc:PWY-7279	SUPFAM:SSF46548	InterPro:Succ_DH/fum_Rdtase_Fe-S
TIGRFAMs:TIGR00384	UniParc:UPI0004EE65BA	:	:	:	:

Description

BnaA07g15100D

Coordinates

chrLK031787:+:426064..426559

Molecular Weight (calculated)

10297.3 Da

IEP (calculated)

7.980

GRAVY (calculated)

-0.479

Length

89 amino acids

Sequence
(BLAST)

1: MYECILCACC STSCPSYWWN PESYLGPAAL LHANRWISDS RDEYTKERLE AINDEFKLYR CHTILNCARA CPKGLNPGKQ ISHIKQLQK

Best Arabidopsis Sequence Match ( AT3G27380.1 )
(BLAST)

001: MASGLIGRLV GTKPSKLATA ARLIPARWTS TGAEAETKAS SGGGRGSNLK TFQIYRWNPD NPGKPELQNY QIDLKDCGPM VLDALIKIKN EMDPSLTFRR
101: SCREGICGSC AMNIDGCNGL ACLTKIQDEA SETTITPLPH MFVIKDLVVD MTNFYNQYKS IEPWLKRKTP ASVPAKEILQ SKKDRAKLDG MYECILCACC
201: STSCPSYWWN PESYLGPAAL LHANRWISDS RDEYTKERLE AIDDEFKLYR CHTILNCARA CPKGLNPGKQ ITHIKQLQR

Arabidopsis Description

SDH2-1Succinate dehydrogenase [ubiquinone] iron-sulfur subunit 1, mitochondrial [Source:UniProtKB/Swiss-Prot;Acc:Q8LBZ7]
SUBAcon: [mitochondrion]

Hydropathy Plot

About CropPAL

The Protein Annotated Locations Database (CropPAL) houses large scale proteomic and GFP localization data from published experimental studies in Soybean (Glycine max), Maize (Zea mays), Wheat (Triticum aestivum), Barley (Hordeum vulgare), Rice (Oryza sativa), Field mustard (Brassica rapa), Canola (Brassica napus), Sorghum (Sorghum bicolor), Potato (Solanum tuberosum), Tomato (Solanum lycopersicum), Banana (Musa acuminata) and Wine grape (Vitis vinifera) as well as precomputed predictions for protein subcellular localizations using protein sequences.