CropPAL

Subcellular Localization

min:

: max

Winner_takes_all: plastid

Predictor Summary:

plastid 4
cytosol 1
mitochondrion 1
extracellular 1

Predictors

GFP

MS/MS

Papers

Winner Takes All:	plastid
Any Predictor:	cytosol, extracellular, plastid
BaCelLo:	plastid
iPSORT:	plastid
MultiLoc:	cytosol
Predotar:	plastid
PProwler:	mitochondrion
WoLF PSORT:	plastid
YLoc:	extracellular

PPI

No PPI Data

Homology

Paralog

locus	Identity	Homology Identity

Ortholog

locus	Homology Species	Location	Identity	Homology Identity
CDX67470	Canola	cytosol, endoplasmic reticulum, extracellular, golgi, mitochondrion, plasma membrane, plastid, vacuole	48.08	56.18
CDY06159	Canola	cytosol	32.69	25.37
CDY20051	Canola	cytosol	47.12	24.5
CDY48359	Canola	cytosol	47.12	24.5
CDY00158	Canola	cytosol	36.54	18.72
CDX83688	Canola	mitochondrion	47.12	17.56
CDY13709	Canola	mitochondrion	47.12	17.44
CDY34152	Canola	mitochondrion	47.12	17.44
CDY33981	Canola	mitochondrion	32.69	11.11
CDY37805	Canola	mitochondrion	32.69	11.11
CDY11704	Canola	cytosol	1.92	3.08
CDX67469	Canola	mitochondrion	0.0	0.0

Protein Annotations

EnsemblPlants:CDY11705	EnsemblPlantsGene:GSBRNA2T00049895001	Gene3D:1.10.1060.10	GO:A0A078FBD3	GO:GO:0003674	GO:GO:0005488
GO:GO:0051536	InterPro:Helical_ferredxn	InterPro:IPR009051	PANTHER:PTHR11921	PANTHER:PTHR11921:SF29	ProteinID:CDY11705
ProteinID:CDY11705.1	SUPFAM:SSF46548	UniParc:UPI0004EEC655	UniProt:A0A078FBD3	MapMan:35.1	:

Description

BnaC06g13130DBnaC06g13130D protein [Source:UniProtKB/TrEMBL;Acc:A0A078FBD3]

Coordinates

chrLK032013:+:580608..581360

Molecular Weight (calculated)

11693.4 Da

IEP (calculated)

8.692

GRAVY (calculated)

0.176

Length

104 amino acids

Sequence
(BLAST)

001: MYECILCACC STSFPSYWWN PESYLGPAAL LHANRRFLLP VSCGVREGAS LNVSVENCKS NCLIVSISFI IYGHLATVEM SILKKDLKPL TTRKQITHIK
101: QLQK

Best Arabidopsis Sequence Match ( AT5G40650.1 )
(BLAST)

001: MAFGLIGRVV GTKSSRLSTA ARLIPARWTS TGSEAQSKAS TGGGGASLKT FQIYRWNPDN PGKPELQDYK IDLKDCGPMV LDALIKIKNE MDPSLTFRRS
101: CREGICGSCA MNIDGCNGLA CLTKIESGSK ETTITPLPHM FVIKDLVVDM TNFYNQYKSI EPWLKRKNPA SVPGKEILQS KKDRAKLDGM YECILCACCS
201: TSCPSYWWNP ESYLGPAALL HANRWISDSR DEYTKERLEA IDDEFKLYRC HTILNCARAC PKGLNPGKQI THIKQLQKSG

Arabidopsis Description

SDH2-2Succinate dehydrogenase [ubiquinone] iron-sulfur subunit 2, mitochondrial [Source:UniProtKB/Swiss-Prot;Acc:Q8LB02]
SUBAcon: [mitochondrion]

Hydropathy Plot

About CropPAL

The Protein Annotated Locations Database (CropPAL) houses large scale proteomic and GFP localization data from published experimental studies in Soybean (Glycine max), Maize (Zea mays), Wheat (Triticum aestivum), Barley (Hordeum vulgare), Rice (Oryza sativa), Field mustard (Brassica rapa), Canola (Brassica napus), Sorghum (Sorghum bicolor), Potato (Solanum tuberosum), Tomato (Solanum lycopersicum), Banana (Musa acuminata) and Wine grape (Vitis vinifera) as well as precomputed predictions for protein subcellular localizations using protein sequences.