CropPAL

Subcellular Localization

min:

: max

Winner_takes_all: cytosol

Predictor Summary:

nucleus 1
cytosol 3
mitochondrion 1

Predictors

GFP

MS/MS

Papers

Winner Takes All:	cytosol
Any Predictor:	cytosol, nucleus
BaCelLo:	nucleus
MultiLoc:	cytosol
PProwler:	mitochondrion
WoLF PSORT:	cytosol
YLoc:	cytosol

PPI

No PPI Data

Homology

Paralog

locus	Identity	Homology Identity

Ortholog

locus	Homology Species	Location	Identity	Homology Identity
CDY20051	Canola	cytosol	83.74	85.0
CDY48359	Canola	cytosol	83.74	85.0
CDX67470	Canola	cytosol, endoplasmic reticulum, extracellular, golgi, mitochondrion, plasma membrane, plastid, vacuole	30.54	69.66
KRH07075	Soybean	cytosol	70.94	61.54
CDY34152	Canola	mitochondrion	84.24	60.85
CDX83688	Canola	mitochondrion	82.76	60.22
CDY13709	Canola	mitochondrion	83.25	60.14
KRG94380	Soybean	mitochondrion	78.82	57.76
CDY11704	Canola	cytosol	15.76	49.23
CDY06159	Canola	cytosol	32.02	48.51
GSMUA_Achr10P...	Banana	cytosol, nucleus, plastid	20.69	43.75
CDY37805	Canola	mitochondrion	60.1	39.87
VIT_14s0219g00150.t01	Wine grape	mitochondrion	78.33	39.65
CDY33981	Canola	mitochondrion	59.61	39.54
CDY11705	Canola	plastid	18.72	36.54
CDX67469	Canola	mitochondrion	18.23	32.46

Protein Annotations

KEGG:00020+1.3.5.1	KEGG:00190+1.3.5.1	KEGG:00650+1.3.5.1	KEGG:00720+1.3.5.1	Gene3D:1.10.1060.10	MapMan:2.3.6.1.2
InterPro:2Fe-2S_ferredoxin-like_sf	InterPro:2Fe-2S_ferredoxin-type	InterPro:2Fe2S_fd_BS	Gene3D:3.10.20.30	InterPro:4Fe4S_Fe-S-bd	InterPro:4Fe4S_Fe_S_CS
GO:A0A078ELB9	InterPro:Beta-grasp_dom_sf	EnsemblPlants:CDY00158	ProteinID:CDY00158	ProteinID:CDY00158.1	GO:GO:0003674
GO:GO:0003824	GO:GO:0005488	GO:GO:0006091	GO:GO:0006099	GO:GO:0008150	GO:GO:0008152
GO:GO:0008177	GO:GO:0009055	GO:GO:0009987	GO:GO:0016491	GO:GO:0051536	GO:GO:0051537
GO:GO:0051538	GO:GO:0055114	EnsemblPlantsGene:GSBRNA2T00109674001	InterPro:Helical_ferredxn	InterPro:IPR001041	InterPro:IPR009051
InterPro:IPR012675	InterPro:IPR017896	PFAM:PF13085	PFAM:PF13534	ScanProsite:PS00197	ScanProsite:PS00198
PFscan:PS51085	PFscan:PS51379	PANTHER:PTHR11921	PANTHER:PTHR11921:SF29	MetaCyc:PWY-3781	MetaCyc:PWY-4302
MetaCyc:PWY-561	MetaCyc:PWY-5690	MetaCyc:PWY-6728	MetaCyc:PWY-6969	MetaCyc:PWY-7254	MetaCyc:PWY-7279
SUPFAM:SSF46548	SUPFAM:SSF54292	InterPro:Succ_DH/fum_Rdtase_Fe-S	InterPro:Succ_DH/fum_Rdtase_N	TIGRFAMs:TIGR00384	UniParc:UPI0004EE1A73

Description

BnaC09g01430D

Coordinates

chrLK031916:+:1108586..1109731

Molecular Weight (calculated)

22842.7 Da

IEP (calculated)

8.108

GRAVY (calculated)

-0.370

Length

203 amino acids

Sequence
(BLAST)

001: MVLDALIKIK NEMDPSLTFR RSCREGICGS CAMNIDGCNG LACLTKIEGG GGAAKETTIT PLPHMFVIKD LVVDMTNFYN QYKSIEPWLK RKSPASEPGK
101: EILQSKKDRA KLDGMYECIL CACCSTSCPS YWWNPESYLG PAALLHANRW ISDSRDEYTK ERLEAIDDEF KLYRCHTILN CARACPKGLN PGKQIAHIKQ
201: LQR

Best Arabidopsis Sequence Match ( AT3G27380.1 )
(BLAST)

001: MASGLIGRLV GTKPSKLATA ARLIPARWTS TGAEAETKAS SGGGRGSNLK TFQIYRWNPD NPGKPELQNY QIDLKDCGPM VLDALIKIKN EMDPSLTFRR
101: SCREGICGSC AMNIDGCNGL ACLTKIQDEA SETTITPLPH MFVIKDLVVD MTNFYNQYKS IEPWLKRKTP ASVPAKEILQ SKKDRAKLDG MYECILCACC
201: STSCPSYWWN PESYLGPAAL LHANRWISDS RDEYTKERLE AIDDEFKLYR CHTILNCARA CPKGLNPGKQ ITHIKQLQR

Arabidopsis Description

SDH2-1Succinate dehydrogenase [ubiquinone] iron-sulfur subunit 1, mitochondrial [Source:UniProtKB/Swiss-Prot;Acc:Q8LBZ7]
SUBAcon: [mitochondrion]

Hydropathy Plot

About CropPAL

The Protein Annotated Locations Database (CropPAL) houses large scale proteomic and GFP localization data from published experimental studies in Soybean (Glycine max), Maize (Zea mays), Wheat (Triticum aestivum), Barley (Hordeum vulgare), Rice (Oryza sativa), Field mustard (Brassica rapa), Canola (Brassica napus), Sorghum (Sorghum bicolor), Potato (Solanum tuberosum), Tomato (Solanum lycopersicum), Banana (Musa acuminata) and Wine grape (Vitis vinifera) as well as precomputed predictions for protein subcellular localizations using protein sequences.