CropPAL

Subcellular Localization

min:

: max

Winner_takes_all: mitochondrion

Predictor Summary:

plastid 1
mitochondrion 6
nucleus 1

Predictors

GFP

MS/MS

Papers

PPI

No PPI Data

Homology

Paralog

locus	Identity	Homology Identity

Ortholog

locus	Homology Species	Location	Identity	Homology Identity
CDY37805	Canola	mitochondrion	98.37	98.37
CDY06159	Canola	cytosol	42.81	97.76
AT5G65165.1	Thale cress	mitochondrion	87.25	86.41
Solyc04g055020.1.1	Tomato	mitochondrion	68.63	67.96
CDY48359	Canola	cytosol	44.12	67.5
CDY20051	Canola	cytosol	43.79	67.0
CDX67470	Canola	cytosol, endoplasmic reticulum, extracellular, golgi, mitochondrion, plasma membrane, plastid, vacuole	19.28	66.29
PGSC0003DMT400053128	Potato	mitochondrion	54.58	64.73
VIT_00s0304g00040.t01	Wine grape	mitochondrion	59.48	64.31
Solyc04g055030.1.1	Tomato	mitochondrion	60.46	61.87
TraesCS5D01G201100.1	Wheat	mitochondrion	59.48	59.87
CDY00158	Canola	cytosol	39.54	59.61
TraesCS5A01G189800.1	Wheat	mitochondrion	59.15	59.54
Zm00001d005663_P001	Maize	mitochondrion	59.15	58.96
HORVU5Hr1G058190.1	Barley	mitochondrion	58.82	58.63
TraesCS5B01G193400.1	Wheat	mitochondrion	57.52	56.77
PGSC0003DMT400086943	Potato	mitochondrion	55.23	56.52
Os09t0370300-01	Rice	mitochondrion	57.19	56.27
OQU89416	Sorghum	mitochondrion	56.86	56.13
CDX83688	Canola	mitochondrion	50.65	55.56
CDY13709	Canola	mitochondrion	50.33	54.8
CDY34152	Canola	mitochondrion	49.67	54.09
CDX67469	Canola	mitochondrion	15.36	41.23
CDY11704	Canola	cytosol	8.5	40.0
CDY11705	Canola	plastid	11.11	32.69

Protein Annotations

KEGG:00020+1.3.5.1	KEGG:00190+1.3.5.1	KEGG:00650+1.3.5.1	KEGG:00720+1.3.5.1	Gene3D:1.10.1060.10	MapMan:2.3.6.1.2
InterPro:2Fe-2S_ferredoxin-like_sf	InterPro:2Fe-2S_ferredoxin-type	InterPro:2Fe2S_fd_BS	Gene3D:3.10.20.30	InterPro:4Fe4S_Fe-S-bd	InterPro:4Fe4S_Fe_S_CS
GO:A0A078H822	UniProt:A0A078H822	InterPro:Beta-grasp_dom_sf	EnsemblPlants:CDY33981	ProteinID:CDY33981	ProteinID:CDY33981.1
GO:GO:0003674	GO:GO:0003824	GO:GO:0005488	GO:GO:0005575	GO:GO:0005622	GO:GO:0005623
GO:GO:0005737	GO:GO:0005739	GO:GO:0005743	GO:GO:0006091	GO:GO:0006099	GO:GO:0008150
GO:GO:0008152	GO:GO:0008177	GO:GO:0009055	GO:GO:0009987	GO:GO:0016020	GO:GO:0016491
GO:GO:0022900	GO:GO:0046872	GO:GO:0051536	GO:GO:0051537	GO:GO:0051538	GO:GO:0051539
GO:GO:0055114	EnsemblPlantsGene:GSBRNA2T00055822001	InterPro:Helical_ferredxn	InterPro:IPR001041	InterPro:IPR009051	InterPro:IPR012675
InterPro:IPR017896	PFAM:PF13085	PFAM:PF13534	ScanProsite:PS00197	ScanProsite:PS00198	PFscan:PS51085
PFscan:PS51379	PANTHER:PTHR11921	PANTHER:PTHR11921:SF23	MetaCyc:PWY-3781	MetaCyc:PWY-4302	MetaCyc:PWY-561
MetaCyc:PWY-5690	MetaCyc:PWY-6728	MetaCyc:PWY-6969	MetaCyc:PWY-7254	MetaCyc:PWY-7279	SUPFAM:SSF46548
SUPFAM:SSF54292	InterPro:Succ_DH/fum_Rdtase_Fe-S	InterPro:Succ_DH/fum_Rdtase_N	TIGRFAMs:TIGR00384	UniParc:UPI0004EDC985	:

Description

BnaC02g43560DSuccinate dehydrogenase [ubiquinone] iron-sulfur subunit, mitochondrial [Source:UniProtKB/TrEMBL;Acc:A0A078H822]

Coordinates

chrLK032325:+:252182..253796

Molecular Weight (calculated)

34926.1 Da

IEP (calculated)

9.173

GRAVY (calculated)

-0.655

Length

306 amino acids

Sequence
(BLAST)

001: MLRLPQRRIC SQAVEKIRLS SSLSGNGDFP ILKGHKAAQD LSKDTLKSHE TIKDKEGQHK VTKKEFKIYR WNPDKPNTKP FLQSFFVDVS TCGPMVLDVL
101: QKIKAEEDPS LSYRRSCREG ICGSCSMNID GTNTVACLKP TNSDTSKPTI ITPLPHMYVI KDLVIDLTNF YQQYKSVEPW LKTRKPPKDG REHLQSPNDR
201: KKLDGLYECI LCACCTTSCP SYWWNPEEFP GPAALLQAYR WISDSRDEFR EERLQAITED ERKVYRCRAI KNCTATCPKG LNPASAILKM KAKHSLPDPV
301: KRIERA

Best Arabidopsis Sequence Match ( AT5G65165.1 )
(BLAST)

001: MSSVLRLLGR RICNPAAEKV RLSSSLSGGG DFPILNGHKA AQDLSKDTLK SQDITKEKEG QHKEVKKEFK IYRWNPDKPN SKPFLQSFFV DLSSCGPMVL
101: DVLQKIKAED DASLSYRRSC REGICGSCSM NIDGTNTVAC LKPINPNTSK PTIITPLPHM YVIKDLVVDL TNFYQQYKSM EPWLKTRKPP KDGREHRQSP
201: KDRKKLDGLY ECILCACCTT SCPSYWWNPE EFPGPAALLQ AYRWISDSRD EYREERLQAI TESETKVYRC RAIKNCTATC PKGLNPASAI LKMKSKHLLS
301: DPLVRTESV

Arabidopsis Description

SDH2-3Succinate dehydrogenase [ubiquinone] iron-sulfur subunit 3, mitochondrial [Source:UniProtKB/Swiss-Prot;Acc:Q9FJP9]
SUBAcon: [mitochondrion]

Hydropathy Plot

About CropPAL

The Protein Annotated Locations Database (CropPAL) houses large scale proteomic and GFP localization data from published experimental studies in Soybean (Glycine max), Maize (Zea mays), Wheat (Triticum aestivum), Barley (Hordeum vulgare), Rice (Oryza sativa), Field mustard (Brassica rapa), Canola (Brassica napus), Sorghum (Sorghum bicolor), Potato (Solanum tuberosum), Tomato (Solanum lycopersicum), Banana (Musa acuminata) and Wine grape (Vitis vinifera) as well as precomputed predictions for protein subcellular localizations using protein sequences.