CropPAL

Subcellular Localization

min:

: max

Winner_takes_all: mitochondrion

Predictor Summary:

plastid 1
mitochondrion 6
nucleus 1

Predictors

GFP

MS/MS

Papers

PPI

No PPI Data

Homology

Paralog

locus	Identity	Homology Identity

Ortholog

locus	Homology Species	Location	Identity	Homology Identity
Zm00001d005663_P001	Maize	mitochondrion	83.87	84.69
TraesCS5A01G189800.1	Wheat	mitochondrion	73.23	74.67
TraesCS5D01G201100.1	Wheat	mitochondrion	72.9	74.34
HORVU5Hr1G058190.1	Barley	mitochondrion	73.55	74.27
Os09t0370300-01	Rice	mitochondrion	71.94	71.7
TraesCS5B01G193400.1	Wheat	mitochondrion	68.39	68.39
CDY06159	Canola	cytosol	27.42	63.43
AT5G65165.1	Thale cress	mitochondrion	56.77	56.96
VIT_00s0304g00040.t01	Wine grape	mitochondrion	51.94	56.89
Bra031877.1-P	Field mustard	mitochondrion	56.13	56.86
CDY37805	Canola	mitochondrion	56.13	56.86
CDY33981	Canola	mitochondrion	56.13	56.86
PGSC0003DMT400053128	Potato	mitochondrion	47.1	56.59
Solyc04g055020.1.1	Tomato	mitochondrion	56.13	56.31
Solyc04g055030.1.1	Tomato	mitochondrion	50.97	52.84
PGSC0003DMT400086943	Potato	mitochondrion	47.1	48.83
OQU79812	Sorghum	mitochondrion	40.97	36.08

Protein Annotations

KEGG:00020+1.3.5.1	KEGG:00190+1.3.5.1	KEGG:00650+1.3.5.1	KEGG:00720+1.3.5.1	Gene3D:1.10.1060.10	MapMan:2.3.6.1.2
InterPro:2Fe-2S_ferredoxin-like_sf	InterPro:2Fe2S_fd_BS	Gene3D:3.10.20.30	InterPro:4Fe4S_Fe-S-bd	InterPro:4Fe4S_Fe_S_CS	UniProt:A0A1W0W4Z5
InterPro:Beta-grasp_dom_sf	GO:GO:0003674	GO:GO:0003824	GO:GO:0005488	GO:GO:0005575	GO:GO:0005622
GO:GO:0005623	GO:GO:0005737	GO:GO:0005739	GO:GO:0006091	GO:GO:0006099	GO:GO:0008150
GO:GO:0008152	GO:GO:0009055	GO:GO:0009987	GO:GO:0016020	GO:GO:0016491	GO:GO:0022900
GO:GO:0045273	GO:GO:0051536	GO:GO:0051537	GO:GO:0055114	InterPro:Helical_ferredxn	InterPro:IPR009051
InterPro:IPR012675	InterPro:IPR017896	EnsemblPlants:OQU89416	ProteinID:OQU89416	ProteinID:OQU89416.1	PFAM:PF13085
PFAM:PF13534	ScanProsite:PS00197	ScanProsite:PS00198	PFscan:PS51379	PANTHER:PTHR11921	PANTHER:PTHR11921:SF23
MetaCyc:PWY-3781	MetaCyc:PWY-4302	MetaCyc:PWY-561	MetaCyc:PWY-5690	MetaCyc:PWY-6728	MetaCyc:PWY-6969
MetaCyc:PWY-7254	MetaCyc:PWY-7279	EnsemblPlantsGene:SORBI_3002G185100	SUPFAM:SSF46548	SUPFAM:SSF54292	InterPro:Succ_DH/fum_Rdtase_Fe-S
InterPro:Succ_DH/fum_Rdtase_N	TIGRFAMs:TIGR00384	UniParc:UPI0009DC8451	SEG:seg	:	:

Description

hypothetical protein

Coordinates

chr2:-:56916507..56917448

Molecular Weight (calculated)

34532.1 Da

IEP (calculated)

9.051

GRAVY (calculated)

-0.503

Length

310 amino acids

Sequence
(BLAST)

001: MLRRTLPALR SVKDGAAGQA GKVDAHFPSL RGHPAARANA REAAEGQARL SAEEEDRRKR DGRATTTVKE FQVYRWNPDS PAGRPFLQSY LVDLASCGPM
101: VLDKIKAEQD STLAFRRSCR EGICGSCSMS IDGVNTVACL KPVDADTSRP SMVTPLPHMY VVKDLVVDLT NFYQQYRSVE PWLKTKRRAS SASEGEATTT
201: RREHLQSPAQ RKKLDGLYEC ILCACCSTAC PSYWWNSEAF LGPAALLHAY RWVSDSRDDY GRERIQSLSE GWDKMYRCRM IKSCTATCPK SLDPAAAISA
301: MKALHQLRKA

Best Arabidopsis Sequence Match ( AT5G65165.1 )
(BLAST)

001: MSSVLRLLGR RICNPAAEKV RLSSSLSGGG DFPILNGHKA AQDLSKDTLK SQDITKEKEG QHKEVKKEFK IYRWNPDKPN SKPFLQSFFV DLSSCGPMVL
101: DVLQKIKAED DASLSYRRSC REGICGSCSM NIDGTNTVAC LKPINPNTSK PTIITPLPHM YVIKDLVVDL TNFYQQYKSM EPWLKTRKPP KDGREHRQSP
201: KDRKKLDGLY ECILCACCTT SCPSYWWNPE EFPGPAALLQ AYRWISDSRD EYREERLQAI TESETKVYRC RAIKNCTATC PKGLNPASAI LKMKSKHLLS
301: DPLVRTESV

Arabidopsis Description

SDH2-3Succinate dehydrogenase [ubiquinone] iron-sulfur subunit 3, mitochondrial [Source:UniProtKB/Swiss-Prot;Acc:Q9FJP9]
SUBAcon: [mitochondrion]

Hydropathy Plot

About CropPAL

The Protein Annotated Locations Database (CropPAL) houses large scale proteomic and GFP localization data from published experimental studies in Soybean (Glycine max), Maize (Zea mays), Wheat (Triticum aestivum), Barley (Hordeum vulgare), Rice (Oryza sativa), Field mustard (Brassica rapa), Canola (Brassica napus), Sorghum (Sorghum bicolor), Potato (Solanum tuberosum), Tomato (Solanum lycopersicum), Banana (Musa acuminata) and Wine grape (Vitis vinifera) as well as precomputed predictions for protein subcellular localizations using protein sequences.