Factsheet for VIT_00s0304g00040.t01

Subcellular Localization

min:

: max

Winner_takes_all: mitochondrion

Predictor Summary:

nucleus 2
mitochondrion 8

Predictors

GFP

MS/MS

Papers

PPI

No PPI Data

Homology

Paralog

locus	Identity	Homology Identity

Ortholog

locus	Homology Species	Location	Identity	Homology Identity
CDY06159	Canola	cytosol	31.8	67.16
Solyc04g055020.1.1	Tomato	mitochondrion	67.14	61.49
PGSC0003DMT400053128	Potato	mitochondrion	54.77	60.08
Bra031877.1-P	Field mustard	mitochondrion	64.66	59.8
CDY37805	Canola	mitochondrion	64.66	59.8
CDY33981	Canola	mitochondrion	64.31	59.48
AT5G65165.1	Thale cress	mitochondrion	63.96	58.58
Solyc04g055030.1.1	Tomato	mitochondrion	61.13	57.86
TraesCS5D01G201100.1	Wheat	mitochondrion	60.78	56.58
TraesCS5A01G189800.1	Wheat	mitochondrion	60.42	56.25
HORVU5Hr1G058190.1	Barley	mitochondrion	59.72	55.05
Os09t0370300-01	Rice	mitochondrion	58.66	53.38
Zm00001d005663_P001	Maize	mitochondrion	56.89	52.44
TraesCS5B01G193400.1	Wheat	mitochondrion	57.24	52.26
PGSC0003DMT400086943	Potato	mitochondrion	55.12	52.17
OQU89416	Sorghum	mitochondrion	56.89	51.94
VIT_14s0219g00150.t01	Wine grape	mitochondrion	47.7	33.67

Protein Annotations

KEGG:00020+1.3.5.1	KEGG:00190+1.3.5.1	KEGG:00650+1.3.5.1	KEGG:00720+1.3.5.1	Gene3D:1.10.1060.10	EntrezGene:100244487
wikigene:100244487	MapMan:2.3.6.1.2	InterPro:2Fe-2S_ferredoxin-like_sf	InterPro:2Fe-2S_ferredoxin-type	InterPro:2Fe2S_fd_BS	Gene3D:3.10.20.30
InterPro:4Fe4S_Fe-S-bd	InterPro:4Fe4S_Fe_S_CS	InterPro:Beta-grasp_dom_sf	ProteinID:CCB62869	ProteinID:CCB62869.1	UniProt:F6I7F1
EMBL:FN596780	GO:GO:0003674	GO:GO:0003824	GO:GO:0005488	GO:GO:0005575	GO:GO:0005622
GO:GO:0005623	GO:GO:0005737	GO:GO:0005739	GO:GO:0005743	GO:GO:0006091	GO:GO:0006099
GO:GO:0008150	GO:GO:0008152	GO:GO:0008177	GO:GO:0009055	GO:GO:0009060	GO:GO:0009987
GO:GO:0016020	GO:GO:0016491	GO:GO:0022904	GO:GO:0045273	GO:GO:0046872	GO:GO:0051536
GO:GO:0051537	GO:GO:0051538	GO:GO:0051539	GO:GO:0055114	InterPro:Helical_ferredxn	InterPro:IPR001041
InterPro:IPR009051	InterPro:IPR012675	InterPro:IPR017896	EntrezGene:LOC100244487	wikigene:LOC100244487	PFAM:PF13085
PFAM:PF13534	ScanProsite:PS00197	ScanProsite:PS00198	PFscan:PS51085	PFscan:PS51379	PANTHER:PTHR11921
PANTHER:PTHR11921:SF23	SUPFAM:SSF46548	SUPFAM:SSF54292	InterPro:Succ_DH/fum_Rdtase_Fe-S	InterPro:Succ_DH/fum_Rdtase_N	TIGRFAMs:TIGR00384
UniParc:UPI0002109EAF	ArrayExpress:VIT_00s0304g00040	EnsemblPlantsGene:VIT_00s0304g00040	EnsemblPlants:VIT_00s0304g00040.t01	RefSeq:XP_002264752	RefSeq:XP_002264752.2

Description

Succinate dehydrogenase [ubiquinone] iron-sulfur subunit, mitochondrial [Source:UniProtKB/TrEMBL;Acc:F6I7F1]

Coordinates

chrUn:+:22409817..22411339

Molecular Weight (calculated)

32294.6 Da

IEP (calculated)

8.204

GRAVY (calculated)

-0.593

Length

283 amino acids

Sequence
(BLAST)

001: MLKRWIRHGY KKVAGLFSKA DTRTKRFPVL EGHPLAQEHA EAAVETQGTI QENLNALKKE FQIYRWNPDF PNTKPHLQSY FVDLSTCGPM VLDALQKIKA
101: EEDSSLSYRR SCREGICGSC AMNIDGTNTV ACLRPIDADT TKPTTITPLP HMSIEPWLKA RQRPEDGREY RQSPKDRKKL DGLYECILCA CCSTSCPSYW
201: WNPEEFPGPA ALLHAYRWVC DSRDDFVDER VQALTEGLKS LYRCRTIKNC TVNCPKSLDP ANAIHKMKTR HLVSQPVELF EGQ

Best Arabidopsis Sequence Match ( AT5G65165.1 )
(BLAST)

001: MSSVLRLLGR RICNPAAEKV RLSSSLSGGG DFPILNGHKA AQDLSKDTLK SQDITKEKEG QHKEVKKEFK IYRWNPDKPN SKPFLQSFFV DLSSCGPMVL
101: DVLQKIKAED DASLSYRRSC REGICGSCSM NIDGTNTVAC LKPINPNTSK PTIITPLPHM YVIKDLVVDL TNFYQQYKSM EPWLKTRKPP KDGREHRQSP
201: KDRKKLDGLY ECILCACCTT SCPSYWWNPE EFPGPAALLQ AYRWISDSRD EYREERLQAI TESETKVYRC RAIKNCTATC PKGLNPASAI LKMKSKHLLS
301: DPLVRTESV

Arabidopsis Description

SDH2-3Succinate dehydrogenase [ubiquinone] iron-sulfur subunit 3, mitochondrial [Source:UniProtKB/Swiss-Prot;Acc:Q9FJP9]
SUBAcon: [mitochondrion]

Hydropathy Plot

About CropPAL

The Protein Annotated Locations Database (CropPAL) houses large scale proteomic and GFP localization data from published experimental studies in Soybean (Glycine max), Maize (Zea mays), Wheat (Triticum aestivum), Barley (Hordeum vulgare), Rice (Oryza sativa), Field mustard (Brassica rapa), Canola (Brassica napus), Sorghum (Sorghum bicolor), Potato (Solanum tuberosum), Tomato (Solanum lycopersicum), Banana (Musa acuminata) and Wine grape (Vitis vinifera) as well as precomputed predictions for protein subcellular localizations using protein sequences.