Factsheet for Solyc04g055030.1.1

Subcellular Localization

min:

: max

Winner_takes_all: mitochondrion

Predictor Summary:

nucleus 1
mitochondrion 5
cytosol 1

Predictors

GFP

MS/MS

Papers

PPI

No PPI Data

Homology

Paralog

locus	Identity	Homology Identity

Ortholog

locus	Homology Species	Location	Identity	Homology Identity
PGSC0003DMT400086943	Potato	mitochondrion	77.26	77.26
Solyc04g055020.1.1	Tomato	mitochondrion	75.25	72.82
CDY06159	Canola	cytosol	31.44	70.15
VIT_00s0304g00040.t01	Wine grape	mitochondrion	57.86	61.13
Bra031877.1-P	Field mustard	mitochondrion	62.21	60.78
CDY37805	Canola	mitochondrion	62.21	60.78
CDY33981	Canola	mitochondrion	61.87	60.46
AT5G65165.1	Thale cress	mitochondrion	61.87	59.87
TraesCS5D01G201100.1	Wheat	mitochondrion	56.86	55.92
TraesCS5A01G189800.1	Wheat	mitochondrion	56.19	55.26
HORVU5Hr1G058190.1	Barley	mitochondrion	56.19	54.72
Solyc02g093680.2.1	Tomato	extracellular, mitochondrion, plastid	49.5	54.01
TraesCS5B01G193400.1	Wheat	mitochondrion	54.52	52.58
Os09t0370300-01	Rice	mitochondrion	54.18	52.09
Zm00001d005663_P001	Maize	mitochondrion	53.18	51.79
OQU89416	Sorghum	mitochondrion	52.84	50.97
Solyc02g092730.2.1	Tomato	cytosol, nucleus	42.14	49.61

Protein Annotations

KEGG:00020+1.3.5.1	KEGG:00190+1.3.5.1	KEGG:00650+1.3.5.1	KEGG:00720+1.3.5.1	Gene3D:1.10.1060.10	MapMan:2.3.6.1.2
InterPro:2Fe-2S_ferredoxin-like_sf	InterPro:2Fe-2S_ferredoxin-type	InterPro:2Fe2S_fd_BS	Gene3D:3.10.20.30	InterPro:4Fe4S_Fe-S-bd	InterPro:4Fe4S_Fe_S_CS
InterPro:Beta-grasp_dom_sf	GO:GO:0003674	GO:GO:0003824	GO:GO:0005488	GO:GO:0005575	GO:GO:0005622
GO:GO:0005623	GO:GO:0005737	GO:GO:0005739	GO:GO:0005743	GO:GO:0006091	GO:GO:0006099
GO:GO:0008150	GO:GO:0008152	GO:GO:0008177	GO:GO:0009055	GO:GO:0009060	GO:GO:0009987
GO:GO:0016020	GO:GO:0016491	GO:GO:0022904	GO:GO:0046872	GO:GO:0051536	GO:GO:0051537
GO:GO:0051538	GO:GO:0051539	GO:GO:0055114	InterPro:Helical_ferredxn	InterPro:IPR001041	InterPro:IPR009051
InterPro:IPR012675	InterPro:IPR017896	UniProt:K4BSQ1	PFAM:PF13085	PFAM:PF13534	ScanProsite:PS00197
ScanProsite:PS00198	PFscan:PS51085	PFscan:PS51379	PANTHER:PTHR11921	PANTHER:PTHR11921:SF23	SUPFAM:SSF46548
SUPFAM:SSF54292	EnsemblPlantsGene:Solyc04g055030.1	EnsemblPlants:Solyc04g055030.1.1	InterPro:Succ_DH/fum_Rdtase_Fe-S	InterPro:Succ_DH/fum_Rdtase_N	TIGRFAMs:TIGR00384
UniParc:UPI0002765A54	:	:	:	:	:

Description

Succinate dehydrogenase [ubiquinone] iron-sulfur subunit, mitochondrial [Source:UniProtKB/TrEMBL;Acc:K4BSQ1]

Coordinates

chr4:-:53546770..53548213

Molecular Weight (calculated)

34273.1 Da

IEP (calculated)

8.379

GRAVY (calculated)

-0.586

Length

299 amino acids

Sequence
(BLAST)

001: MSRNLIKEGI TKVVGGWRKE FPILEGHPIG QQHGEEVVKS IENLKRGDDK CKEFRIYRWS PHNPNQKPYF QSFFLHLPSC GPMVLDALQK IKGEVDSSLT
101: YRRSCREGIC GSCAMNINGV NTVACLKPID TDTSRPMTIT PLPHLFVIKD LVVDLSDFYH QYKSIEPWLK TRNPPPEGKE YRQTPEERKK LDGLYECILC
201: ACCTTSCPSY WWNPEEFLGP AALINTYRWI SDSRDDFANE RLQAITEDER RLYRCRAIGN CTACCPKSLR PSEAISKMKT KHLTGIPVET LSNNRKTSH

Best Arabidopsis Sequence Match ( AT5G65165.1 )
(BLAST)

001: MSSVLRLLGR RICNPAAEKV RLSSSLSGGG DFPILNGHKA AQDLSKDTLK SQDITKEKEG QHKEVKKEFK IYRWNPDKPN SKPFLQSFFV DLSSCGPMVL
101: DVLQKIKAED DASLSYRRSC REGICGSCSM NIDGTNTVAC LKPINPNTSK PTIITPLPHM YVIKDLVVDL TNFYQQYKSM EPWLKTRKPP KDGREHRQSP
201: KDRKKLDGLY ECILCACCTT SCPSYWWNPE EFPGPAALLQ AYRWISDSRD EYREERLQAI TESETKVYRC RAIKNCTATC PKGLNPASAI LKMKSKHLLS
301: DPLVRTESV

Arabidopsis Description

SDH2-3Succinate dehydrogenase [ubiquinone] iron-sulfur subunit 3, mitochondrial [Source:UniProtKB/Swiss-Prot;Acc:Q9FJP9]
SUBAcon: [mitochondrion]

Hydropathy Plot

About CropPAL

The Protein Annotated Locations Database (CropPAL) houses large scale proteomic and GFP localization data from published experimental studies in Soybean (Glycine max), Maize (Zea mays), Wheat (Triticum aestivum), Barley (Hordeum vulgare), Rice (Oryza sativa), Field mustard (Brassica rapa), Canola (Brassica napus), Sorghum (Sorghum bicolor), Potato (Solanum tuberosum), Tomato (Solanum lycopersicum), Banana (Musa acuminata) and Wine grape (Vitis vinifera) as well as precomputed predictions for protein subcellular localizations using protein sequences.