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Tomato
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Tomato
Subcellular Localization
min:
: max

 
Winner_takes_all: mitochondrion, plastid, extracellular

Predictor Summary:
  • plastid 1
  • mitochondrion 9
  • cytosol 1
Predictors GFP MS/MS Papers
Winner Takes All:extracellular, mitochondrion, plastid
Any Predictor:cytosol, mitochondrion, plastid
BaCelLo:plastid
EpiLoc:mitochondrion
iPSORT:mitochondrion
MultiLoc:mitochondrion
Plant-mPloc:cytosol, mitochondrion
Predotar:mitochondrion
PProwler:mitochondrion
TargetP:mitochondrion
WoLF PSORT:mitochondrion
YLoc:mitochondrion
 plastid: 26371478
extracellular: 29876421
msms PMID: 29876421 doi
L Ceballos-Laita, E Gutierrez-Carbonell, D Takahashi, A Abadía, M Uemura, J Abadía, AF López-Millán
Cryobiofrontier Research Center, Faculty of Agriculture, Iwate University, Morioka 020-8550, Japan., Plant Stress Physiology Group, Plant Nutrition Department, Aula Dei Experimental Station, CSIC, P.O. Box 13034, 50080 Zaragoza, Spain., United Graduate School of Agricultural Sciences, Iwate University, Morioka 020-8550, Japan., USDA-ARS Children's Nutrition Research Center, Department of Pediatrics, Baylor College of Medicine, 1100 Bates St., Houston, TX 77030, USA.
msms PMID: 26371478 doi
M Suzuki, S Takahashi, T Kondo, H Dohra, Y Ito, Y Kiriiwa, M Hayashi, S Kamiya, M Kato, M Fujiwara, Y Fukao, M Kobayashi, N Nagata, R Motohashi
Faculty of Agriculture, Shizuoka University, Shizuoka city, Shizuoka, Japan., Faculty of Science, Japan Woman's University, Bunkyo-ku, Tokyo, Japan., Instrumental Research Support Office, Research Institute of Green Science and Technology, Shizuoka University, Shizuoka city, Shizuoka, Japan., The Plant Science Education Unit, Nara Institute of Science and Technology, Ikoma city, Nara, Japan.
PPI
No PPI Data
Homology

Paralog

locusIdentityHomology Identity

Ortholog

locusHomology SpeciesLocationIdentityHomology Identity
PGSC0003DMT400032862 Potato mitochondrion 98.91 98.91
Bra028469.1-P Field mustard cytosol 64.6 88.06
CDX67470 Canola cytosol, endoplasmic reticulum, extracellular, golgi, mitochondrion, plasma membrane, plastid, vacuole 28.47 87.64
GSMUA_Achr11P... Banana cytosol 61.31 83.58
AT5G40650.1 Thale cress mitochondrion 79.2 77.5
AT3G27380.1 Thale cress mitochondrion 78.83 77.42
Bra025272.1-P Field mustard mitochondrion 77.37 75.44
Bra039082.1-P Field mustard mitochondrion 61.68 75.11
Bra033006.1-P Field mustard mitochondrion 77.01 75.09
Solyc02g092730.2.1 Tomato cytosol, nucleus 66.42 71.65
GSMUA_Achr11P... Banana mitochondrion 72.63 70.32
Zm00001d011333_P001 Maize cytosol, golgi, mitochondrion 35.4 69.78
GSMUA_Achr7P02800_001 Banana mitochondrion 46.35 61.65
GSMUA_Achr11P... Banana cytosol, extracellular 21.53 61.46
CDX67469 Canola mitochondrion 24.45 58.77
VIT_14s0219g00150.t01 Wine grape mitochondrion 80.29 54.86
KRH33590 Soybean cytosol 33.58 53.49
Zm00001d045148_P001 Maize mitochondrion 27.74 53.15
Solyc04g055030.1.1 Tomato mitochondrion 54.01 49.5
Os08t0120000-05 Rice mitochondrion 62.77 49.14
Solyc04g055020.1.1 Tomato mitochondrion 55.11 48.87
HORVU7Hr1G074890.6 Barley mitochondrion 62.41 48.86
Zm00001d035136_P001 Maize mitochondrion 72.26 48.77
Zm00001d049649_P001 Maize mitochondrion 71.17 47.91
OQU79812 Sorghum mitochondrion 61.31 47.73
TraesCS7A01G314000.1 Wheat mitochondrion 62.04 46.45
TraesCS7B01G214900.1 Wheat mitochondrion 62.04 46.45
TraesCS7D01G311200.1 Wheat mitochondrion 62.04 46.45
HORVU5Hr1G057270.1 Barley cytosol, mitochondrion, plastid 15.33 45.65
CDY11704 Canola cytosol 10.58 44.62
GSMUA_Achr7P02810_001 Banana extracellular, vacuole 20.07 36.18
Os09t0370200-01 Rice mitochondrion 13.14 12.68
Protein Annotations
KEGG:00020+1.3.5.1KEGG:00190+1.3.5.1KEGG:00650+1.3.5.1KEGG:00720+1.3.5.1Gene3D:1.10.1060.10MapMan:2.3.6.1.2
InterPro:2Fe-2S_ferredoxin-like_sfInterPro:2Fe-2S_ferredoxin-typeInterPro:2Fe2S_fd_BSGene3D:3.10.20.30InterPro:4Fe4S_Fe-S-bdInterPro:4Fe4S_Fe_S_CS
InterPro:Beta-grasp_dom_sfUniProt:D2KQI9GO:GO:0003674GO:GO:0003824GO:GO:0005488GO:GO:0005575
GO:GO:0005622GO:GO:0005623GO:GO:0005737GO:GO:0005739GO:GO:0005743GO:GO:0006091
GO:GO:0006099GO:GO:0008150GO:GO:0008152GO:GO:0008177GO:GO:0009055GO:GO:0009060
GO:GO:0009987GO:GO:0016020GO:GO:0016491GO:GO:0022900GO:GO:0022904GO:GO:0046872
GO:GO:0051536GO:GO:0051537GO:GO:0051538GO:GO:0051539GO:GO:0055114EMBL:GU262989
InterPro:Helical_ferredxnInterPro:IPR001041InterPro:IPR009051InterPro:IPR012675InterPro:IPR017896PFAM:PF13085
PFAM:PF13534ScanProsite:PS00197ScanProsite:PS00198PFscan:PS51085PFscan:PS51379PANTHER:PTHR11921
PANTHER:PTHR11921:SF29SUPFAM:SSF46548SUPFAM:SSF54292EnsemblPlantsGene:Solyc02g093680.2EnsemblPlants:Solyc02g093680.2.1InterPro:Succ_DH/fum_Rdtase_Fe-S
InterPro:Succ_DH/fum_Rdtase_NTIGRFAMs:TIGR00384UniParc:UPI0001C013FF:::
Description
Succinate dehydrogenase [ubiquinone] iron-sulfur subunit, mitochondrial [Source:UniProtKB/TrEMBL;Acc:D2KQI9]
Coordinates
chr2:+:54436685..54439934
Molecular Weight (calculated)
30863.3 Da
IEP (calculated)
8.529
GRAVY (calculated)
-0.438
Length
274 amino acids
Sequence
(BLAST)
001: MATSLIRRAI SRVQSSAPAA RLLVARAHAS DSQAQKVESK PNLKSFQIYR WTPDNPGKPE LKEYKIDLKE CGPMVLDALI KIKNEIDPTL TFRRSCREGI
101: CGSCAMNIDG CNGLACLTKI SSDSESTITP LPHMFVIKDL VVDMTNFYNQ YKSIEPWLKR KTPAPTPGKE IPQSKSDRAK LDGMYECILC ACCSTSCPSY
201: WWNPESYLGP AALLHANRWI MDSRDEYTQE RLDAVNDEFK LYRCHTILNC SRACPKGLNP GKHIQNIKKL EMAP
Best Arabidopsis Sequence Match ( AT5G40650.1 )
(BLAST)
001: MAFGLIGRVV GTKSSRLSTA ARLIPARWTS TGSEAQSKAS TGGGGASLKT FQIYRWNPDN PGKPELQDYK IDLKDCGPMV LDALIKIKNE MDPSLTFRRS
101: CREGICGSCA MNIDGCNGLA CLTKIESGSK ETTITPLPHM FVIKDLVVDM TNFYNQYKSI EPWLKRKNPA SVPGKEILQS KKDRAKLDGM YECILCACCS
201: TSCPSYWWNP ESYLGPAALL HANRWISDSR DEYTKERLEA IDDEFKLYRC HTILNCARAC PKGLNPGKQI THIKQLQKSG
Arabidopsis Description
SDH2-2Succinate dehydrogenase [ubiquinone] iron-sulfur subunit 2, mitochondrial [Source:UniProtKB/Swiss-Prot;Acc:Q8LB02]
SUBAcon: [mitochondrion]
Hydropathy Plot

About CropPAL

The Protein Annotated Locations Database (CropPAL) houses large scale proteomic and GFP localization data from published experimental studies in Soybean (Glycine max), Maize (Zea mays), Wheat (Triticum aestivum), Barley (Hordeum vulgare), Rice (Oryza sativa), Field mustard (Brassica rapa), Canola (Brassica napus), Sorghum (Sorghum bicolor), Potato (Solanum tuberosum), Tomato (Solanum lycopersicum), Banana (Musa acuminata) and Wine grape (Vitis vinifera) as well as precomputed predictions for protein subcellular localizations using protein sequences.