Subcellular Localization
min:
: max
Winner_takes_all: extracellular, cytosol
Predictor Summary:
Predictor Summary:
- nucleus 1
- mitochondrion 2
- plastid 1
- cytosol 2
- extracellular 3
- endoplasmic reticulum 2
- vacuole 2
- plasma membrane 2
- golgi 2
| Predictors | GFP | MS/MS | Papers | ||||||||||||||||||||||
|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|
|
PPI
No PPI Data
Homology
Paralog
| locus | Identity | Homology Identity |
|---|
Ortholog
| locus | Homology Species | Location | Identity | Homology Identity |
|---|---|---|---|---|
| CDX67470 | Canola | cytosol, endoplasmic reticulum, extracellular, golgi, mitochondrion, plasma membrane, plastid, vacuole | 61.46 | 66.29 |
| GSMUA_Achr11P... | Banana | cytosol | 68.75 | 32.84 |
| GSMUA_Achr10P... | Banana | cytosol, nucleus, plastid | 28.12 | 28.12 |
| GSMUA_Achr7P02810_001 | Banana | extracellular, vacuole | 37.5 | 23.68 |
| GSMUA_Achr11P... | Banana | mitochondrion | 65.62 | 22.26 |
| Solyc02g092730.2.1 | Tomato | cytosol, nucleus | 58.33 | 22.05 |
| PGSC0003DMT400032862 | Potato | mitochondrion | 61.46 | 21.53 |
| Solyc02g093680.2.1 | Tomato | extracellular, mitochondrion, plastid | 61.46 | 21.53 |
| VIT_14s0219g00150.t01 | Wine grape | mitochondrion | 62.5 | 14.96 |
| GSMUA_Achr7P02800_001 | Banana | mitochondrion | 31.25 | 14.56 |
| KRH33590 | Soybean | cytosol | 8.33 | 4.65 |
| CDY11704 | Canola | cytosol | 2.08 | 3.08 |
| PGSC0003DMT400064279 | Potato | cytosol | 3.12 | 2.65 |
| CDX67469 | Canola | mitochondrion | 0.0 | 0.0 |
| HORVU5Hr1G057270.1 | Barley | cytosol, mitochondrion, plastid | 0.0 | 0.0 |
Protein Annotations
| EnsemblPlants:GSMUA_Achr11P19130_001 | EnsemblPlants:GSMUA_Achr11T19130_001 | EnsemblPlantsGene:GSMUA_Achr11G19130_001 | Gene3D:1.10.1060.10 | GO:GO:0003674 | GO:GO:0005488 |
| GO:GO:0051536 | InterPro:4Fe4S_Fe_S_CS | InterPro:Helical_ferredxn | InterPro:IPR009051 | PANTHER:PTHR11921 | PANTHER:PTHR11921:SF29 |
| PFAM:PF13534 | ScanProsite:PS00198 | SUPFAM:SSF46548 | UniParc:UPI0002950FF2 | UniProt:M0RTJ3 | MapMan:35.1 |
Description
Succinate dehydrogenase [ubiquinone] iron-sulfur subunit 2, mitochondrial [Source:GMGC_GENE;Acc:GSMUA_Achr11G19130_001]
Coordinates
chr11:+:20350901..20359572
Molecular Weight (calculated)
11365.8 Da
IEP (calculated)
7.994
GRAVY (calculated)
-0.039
Length
96 amino acids
Sequence
(BLAST)
(BLAST)
1: MYECILCACC WTSCPSCWWN PEVYLGPVAL LHAHSWDQNT KVRLDAVNDE FKPYRYHTIM NCAHACPMGL NPVKQIEYRS KSFSFIKFFL RYHLLL
001: MAFGLIGRVV GTKSSRLSTA ARLIPARWTS TGSEAQSKAS TGGGGASLKT FQIYRWNPDN PGKPELQDYK IDLKDCGPMV LDALIKIKNE MDPSLTFRRS
101: CREGICGSCA MNIDGCNGLA CLTKIESGSK ETTITPLPHM FVIKDLVVDM TNFYNQYKSI EPWLKRKNPA SVPGKEILQS KKDRAKLDGM YECILCACCS
201: TSCPSYWWNP ESYLGPAALL HANRWISDSR DEYTKERLEA IDDEFKLYRC HTILNCARAC PKGLNPGKQI THIKQLQKSG
101: CREGICGSCA MNIDGCNGLA CLTKIESGSK ETTITPLPHM FVIKDLVVDM TNFYNQYKSI EPWLKRKNPA SVPGKEILQS KKDRAKLDGM YECILCACCS
201: TSCPSYWWNP ESYLGPAALL HANRWISDSR DEYTKERLEA IDDEFKLYRC HTILNCARAC PKGLNPGKQI THIKQLQKSG
Arabidopsis Description
SDH2-2Succinate dehydrogenase [ubiquinone] iron-sulfur subunit 2, mitochondrial [Source:UniProtKB/Swiss-Prot;Acc:Q8LB02]
SUBAcon: [mitochondrion]
SUBAcon: [mitochondrion]
Hydropathy Plot
About CropPAL
The Protein Annotated Locations Database (CropPAL) houses large scale proteomic and GFP localization data from published experimental studies in Soybean (Glycine max), Maize (Zea mays), Wheat (Triticum aestivum), Barley (Hordeum vulgare), Rice (Oryza sativa), Field mustard (Brassica rapa), Canola (Brassica napus), Sorghum (Sorghum bicolor), Potato (Solanum tuberosum), Tomato (Solanum lycopersicum), Banana (Musa acuminata) and Wine grape (Vitis vinifera) as well as precomputed predictions for protein subcellular localizations using protein sequences.