CropPAL

Subcellular Localization

min:

: max

Winner_takes_all: cytosol

Predictor Summary:

extracellular 1
endoplasmic reticulum 1
vacuole 1
plasma membrane 1
golgi 1
cytosol 2
mitochondrion 1
plastid 1

Predictors

GFP

MS/MS

Papers

Winner Takes All:	cytosol
Any Predictor:	cytosol, plastid, secretory
BaCelLo:	secretory
MultiLoc:	cytosol
PProwler:	mitochondrion
WoLF PSORT:	plastid
YLoc:	cytosol

PPI

No PPI Data

Homology

Paralog

locus	Identity	Homology Identity

Ortholog

locus	Homology Species	Location	Identity	Homology Identity
PGSC0003DMT400064279	Potato	cytosol	43.08	24.78
CDX67469	Canola	mitochondrion	40.0	22.81
HORVU5Hr1G057270.1	Barley	cytosol, mitochondrion, plastid	30.77	21.74
Zm00001d045148_P001	Maize	mitochondrion	40.0	18.18
CDY48359	Canola	cytosol	49.23	16.0
CDY20051	Canola	cytosol	49.23	16.0
CDY00158	Canola	cytosol	49.23	15.76
GSMUA_Achr11P...	Banana	cytosol	47.69	15.42
KRH33590	Soybean	cytosol	36.92	13.95
GSMUA_Achr7P02800_001	Banana	mitochondrion	43.08	13.59
CDX83688	Canola	mitochondrion	49.23	11.47
Solyc02g092730.2.1	Tomato	cytosol, nucleus	44.62	11.42
CDY13709	Canola	mitochondrion	49.23	11.39
CDY34152	Canola	mitochondrion	47.69	11.03
GSMUA_Achr11P...	Banana	mitochondrion	47.69	10.95
Solyc02g093680.2.1	Tomato	extracellular, mitochondrion, plastid	44.62	10.58
PGSC0003DMT400032862	Potato	mitochondrion	44.62	10.58
HORVU7Hr1G074890.6	Barley	mitochondrion	47.69	8.86
OQU79812	Sorghum	mitochondrion	46.15	8.52
CDY33981	Canola	mitochondrion	40.0	8.5
CDY37805	Canola	mitochondrion	40.0	8.5
TraesCS7B01G214900.1	Wheat	mitochondrion	47.69	8.47
TraesCS7D01G311200.1	Wheat	mitochondrion	47.69	8.47
TraesCS7A01G314000.1	Wheat	mitochondrion	47.69	8.47
Os08t0120000-05	Rice	mitochondrion	44.62	8.29
VIT_14s0219g00150.t01	Wine grape	mitochondrion	47.69	7.73
Zm00001d035136_P001	Maize	mitochondrion	46.15	7.39
Zm00001d049649_P001	Maize	mitochondrion	46.15	7.37
GSMUA_Achr7P02810_001	Banana	extracellular, vacuole	9.23	3.95
Os09t0370200-01	Rice	mitochondrion	13.85	3.17
CDY06159	Canola	cytosol	6.15	2.99
Zm00001d011333_P001	Maize	cytosol, golgi, mitochondrion	6.15	2.88
CDX67470	Canola	cytosol, endoplasmic reticulum, extracellular, golgi, mitochondrion, plasma membrane, plastid, vacuole	3.08	2.25
GSMUA_Achr11P...	Banana	cytosol, extracellular	3.08	2.08
CDY11705	Canola	plastid	3.08	1.92

Protein Annotations

KEGG:00020+1.3.5.1	KEGG:00190+1.3.5.1	KEGG:00650+1.3.5.1	KEGG:00720+1.3.5.1	InterPro:2Fe-2S_ferredoxin-like_sf	Gene3D:3.10.20.30
MapMan:35.2	GO:A0A078FFG6	UniProt:A0A078FFG6	InterPro:Beta-grasp_dom_sf	EnsemblPlants:CDY11704	ProteinID:CDY11704
ProteinID:CDY11704.1	GO:GO:0003674	GO:GO:0003824	GO:GO:0005488	GO:GO:0006091	GO:GO:0008150
GO:GO:0008152	GO:GO:0009055	GO:GO:0009987	GO:GO:0022900	GO:GO:0051536	EnsemblPlantsGene:GSBRNA2T00049894001
InterPro:IPR012675	PFAM:PF13085	PANTHER:PTHR11921	PANTHER:PTHR11921:SF29	MetaCyc:PWY-3781	MetaCyc:PWY-4302
MetaCyc:PWY-561	MetaCyc:PWY-5690	MetaCyc:PWY-6728	MetaCyc:PWY-6969	MetaCyc:PWY-7254	MetaCyc:PWY-7279
SUPFAM:SSF54292	InterPro:Succ_DH/fum_Rdtase_N	UniParc:UPI0004EDEC2B	:	:	:

Description

BnaC06g13120DBnaC06g13120D protein [Source:UniProtKB/TrEMBL;Acc:A0A078FFG6]

Coordinates

chrLK032013:+:580272..580522

Molecular Weight (calculated)

7182.4 Da

IEP (calculated)

4.469

GRAVY (calculated)

-0.418

Length

65 amino acids

Sequence
(BLAST)

1: MVLDALIKIK NEMDPSLTFR RSCREGICDR VGVFQGDDDH ASAAYVCDKG SGGGHDEFLQ SVQEY

Best Arabidopsis Sequence Match ( AT5G40650.2 )
(BLAST)

001: MAFGLIGRVV GTKSSRLSTA ARLIPARWTS TGSEAQSKAS TGGGGASLKT FQIYRWNPDN PGKPELQDYK IDLKDCGPMV LDALIKIKNE MDPSLTFRRS
101: CREGICGSCA MNIDGCNGLA CLTKIESGSK ETTITPLPHM FVIKDLVVDM TNFYNQYKSI EPWLKRKNPA SVPGKEILQS KKDRAKLDGM YECILCACCS
201: TSCPSYWWNP ESYLGPAALL HANR

Arabidopsis Description

SDH2-2Succinate dehydrogenase [ubiquinone] iron-sulfur subunit 2, mitochondrial [Source:UniProtKB/Swiss-Prot;Acc:Q8LB02]
SUBAcon: [mitochondrion]

Hydropathy Plot

About CropPAL

The Protein Annotated Locations Database (CropPAL) houses large scale proteomic and GFP localization data from published experimental studies in Soybean (Glycine max), Maize (Zea mays), Wheat (Triticum aestivum), Barley (Hordeum vulgare), Rice (Oryza sativa), Field mustard (Brassica rapa), Canola (Brassica napus), Sorghum (Sorghum bicolor), Potato (Solanum tuberosum), Tomato (Solanum lycopersicum), Banana (Musa acuminata) and Wine grape (Vitis vinifera) as well as precomputed predictions for protein subcellular localizations using protein sequences.