Factsheet for GSMUA_Achr11P08740_001

Subcellular Localization

min:

: max

Winner_takes_all: mitochondrion

Predictor Summary:

plastid 1
mitochondrion 9
cytosol 1

Predictors

GFP

MS/MS

Papers

PPI

No PPI Data

Homology

Paralog

locus	Identity	Homology Identity

Ortholog

locus	Homology Species	Location	Identity	Homology Identity
GSMUA_Achr11P...	Banana	cytosol	66.43	93.53
PGSC0003DMT400064279	Potato	cytosol	34.28	85.84
CDX67470	Canola	cytosol, endoplasmic reticulum, extracellular, golgi, mitochondrion, plasma membrane, plastid, vacuole	26.5	84.27
Solyc02g093680.2.1	Tomato	extracellular, mitochondrion, plastid	70.32	72.63
PGSC0003DMT400032862	Potato	mitochondrion	69.96	72.26
GSMUA_Achr7P02800_001	Banana	mitochondrion	50.88	69.9
GSMUA_Achr11P...	Banana	cytosol, extracellular	22.26	65.62
Solyc02g092730.2.1	Tomato	cytosol, nucleus	56.18	62.6
CDX67469	Canola	mitochondrion	21.91	54.39
KRH33590	Soybean	cytosol	31.1	51.16
HORVU5Hr1G057270.1	Barley	cytosol, mitochondrion, plastid	16.61	51.09
GSMUA_Achr10P...	Banana	cytosol, nucleus, plastid	16.96	50.0
VIT_14s0219g00150.t01	Wine grape	mitochondrion	70.67	49.88
CDY11704	Canola	cytosol	10.95	47.69
GSMUA_Achr7P02810_001	Banana	extracellular, vacuole	22.26	41.45

Protein Annotations

KEGG:00020+1.3.5.1	KEGG:00190+1.3.5.1	KEGG:00650+1.3.5.1	KEGG:00720+1.3.5.1	Gene3D:1.10.1060.10	MapMan:2.3.6.1.2
InterPro:2Fe-2S_ferredoxin-like_sf	InterPro:2Fe-2S_ferredoxin-type	InterPro:2Fe2S_fd_BS	Gene3D:3.10.20.30	InterPro:4Fe4S_Fe-S-bd	InterPro:4Fe4S_Fe_S_CS
InterPro:Beta-grasp_dom_sf	GO:GO:0003674	GO:GO:0003824	GO:GO:0005488	GO:GO:0005575	GO:GO:0005622
GO:GO:0005623	GO:GO:0005737	GO:GO:0005739	GO:GO:0005743	GO:GO:0006091	GO:GO:0006099
GO:GO:0008150	GO:GO:0008152	GO:GO:0008177	GO:GO:0009055	GO:GO:0009987	GO:GO:0016020
GO:GO:0016491	GO:GO:0022900	GO:GO:0046872	GO:GO:0051536	GO:GO:0051537	GO:GO:0051538
GO:GO:0051539	GO:GO:0055114	EnsemblPlantsGene:GSMUA_Achr11G08740_001	EnsemblPlants:GSMUA_Achr11P08740_001	EnsemblPlants:GSMUA_Achr11T08740_001	InterPro:Helical_ferredxn
InterPro:IPR001041	InterPro:IPR009051	InterPro:IPR012675	InterPro:IPR017896	UniProt:M0RQK4	PFAM:PF13085
PFAM:PF13534	ScanProsite:PS00197	ScanProsite:PS00198	PFscan:PS51085	PFscan:PS51379	PANTHER:PTHR11921
PANTHER:PTHR11921:SF29	SUPFAM:SSF46548	SUPFAM:SSF54292	InterPro:Succ_DH/fum_Rdtase_Fe-S	InterPro:Succ_DH/fum_Rdtase_N	TIGRFAMs:TIGR00384
UniParc:UPI0002957B6F	SEG:seg	:	:	:	:

Description

Succinate dehydrogenase [ubiquinone] iron-sulfur subunit 2, mitochondrial [Source:GMGC_GENE;Acc:GSMUA_Achr11G08740_001]

Coordinates

chr11:+:6749898..6755173

Molecular Weight (calculated)

31637.0 Da

IEP (calculated)

8.587

GRAVY (calculated)

-0.458

Length

283 amino acids

Sequence
(BLAST)

001: MAASRVLLRR GAAAARGLLP THAPETTAAR FLQAQHHSSQ SDSAASKPKR TKTFSIYRWN PDQPEKPQLQ SYEIDLGECG PMVLDALIKI KNEIDPSLTF
101: RRSCREGICG SCAMNIDGDN GLACLTKIPS SSAAATTITP LPHMYVVKDL VVDMTNFYSQ YKSVEPWLKR KDPPPIPGKE VPQSKKDRAK LDGMYECILC
201: ACCSTACPSY WWNPETYLGP AALLHAHRWI QDSRDQYTKE RLDAINDEFK LYRCHAIMNC AHACPKGLNP AKQIESIKKL QLQ

Best Arabidopsis Sequence Match ( AT5G40650.1 )
(BLAST)

001: MAFGLIGRVV GTKSSRLSTA ARLIPARWTS TGSEAQSKAS TGGGGASLKT FQIYRWNPDN PGKPELQDYK IDLKDCGPMV LDALIKIKNE MDPSLTFRRS
101: CREGICGSCA MNIDGCNGLA CLTKIESGSK ETTITPLPHM FVIKDLVVDM TNFYNQYKSI EPWLKRKNPA SVPGKEILQS KKDRAKLDGM YECILCACCS
201: TSCPSYWWNP ESYLGPAALL HANRWISDSR DEYTKERLEA IDDEFKLYRC HTILNCARAC PKGLNPGKQI THIKQLQKSG

Arabidopsis Description

SDH2-2Succinate dehydrogenase [ubiquinone] iron-sulfur subunit 2, mitochondrial [Source:UniProtKB/Swiss-Prot;Acc:Q8LB02]
SUBAcon: [mitochondrion]

Hydropathy Plot

About CropPAL

The Protein Annotated Locations Database (CropPAL) houses large scale proteomic and GFP localization data from published experimental studies in Soybean (Glycine max), Maize (Zea mays), Wheat (Triticum aestivum), Barley (Hordeum vulgare), Rice (Oryza sativa), Field mustard (Brassica rapa), Canola (Brassica napus), Sorghum (Sorghum bicolor), Potato (Solanum tuberosum), Tomato (Solanum lycopersicum), Banana (Musa acuminata) and Wine grape (Vitis vinifera) as well as precomputed predictions for protein subcellular localizations using protein sequences.