Factsheet for GSMUA_Achr7P02800_001

Subcellular Localization

min:

: max

Winner_takes_all: mitochondrion

Predictor Summary:

plastid 2
mitochondrion 8

Predictors

GFP

MS/MS

Papers

PPI

No PPI Data

Homology

Paralog

locus	Identity	Homology Identity

Ortholog

locus	Homology Species	Location	Identity	Homology Identity
PGSC0003DMT400064279	Potato	cytosol	33.5	61.06
GSMUA_Achr11P...	Banana	cytosol	51.46	52.74
CDX67469	Canola	mitochondrion	28.64	51.75
GSMUA_Achr11P...	Banana	mitochondrion	69.9	50.88
KRH33590	Soybean	cytosol	39.81	47.67
HORVU5Hr1G057270.1	Barley	cytosol, mitochondrion, plastid	20.87	46.74
PGSC0003DMT400032862	Potato	mitochondrion	61.65	46.35
Solyc02g093680.2.1	Tomato	extracellular, mitochondrion, plastid	61.65	46.35
CDY11704	Canola	cytosol	13.59	43.08
Solyc02g092730.2.1	Tomato	cytosol, nucleus	47.57	38.58
GSMUA_Achr10P...	Banana	cytosol, nucleus, plastid	17.48	37.5
CDX67470	Canola	cytosol, endoplasmic reticulum, extracellular, golgi, mitochondrion, plasma membrane, plastid, vacuole	14.56	33.71
VIT_14s0219g00150.t01	Wine grape	mitochondrion	61.16	31.42
GSMUA_Achr11P...	Banana	cytosol, extracellular	14.56	31.25
GSMUA_Achr7P02810_001	Banana	extracellular, vacuole	9.22	12.5

Protein Annotations

KEGG:00020+1.3.5.1	KEGG:00190+1.3.5.1	KEGG:00650+1.3.5.1	KEGG:00720+1.3.5.1	Gene3D:1.10.1060.10	MapMan:2.3.6.1.2
InterPro:2Fe-2S_ferredoxin-like_sf	InterPro:2Fe-2S_ferredoxin-type	InterPro:2Fe2S_fd_BS	Gene3D:3.10.20.30	InterPro:4Fe4S_Fe-S-bd	InterPro:4Fe4S_Fe_S_CS
InterPro:Beta-grasp_dom_sf	GO:GO:0003674	GO:GO:0003824	GO:GO:0005488	GO:GO:0005575	GO:GO:0005622
GO:GO:0005623	GO:GO:0005737	GO:GO:0005739	GO:GO:0005743	GO:GO:0006091	GO:GO:0006099
GO:GO:0008150	GO:GO:0008152	GO:GO:0008177	GO:GO:0009055	GO:GO:0009987	GO:GO:0016020
GO:GO:0016491	GO:GO:0022900	GO:GO:0046872	GO:GO:0051536	GO:GO:0051537	GO:GO:0051538
GO:GO:0051539	GO:GO:0055114	EnsemblPlantsGene:GSMUA_Achr7G02800_001	EnsemblPlants:GSMUA_Achr7P02800_001	EnsemblPlants:GSMUA_Achr7T02800_001	InterPro:Helical_ferredxn
InterPro:IPR001041	InterPro:IPR009051	InterPro:IPR012675	InterPro:IPR017896	UniProt:M0TE70	PFAM:PF13085
ScanProsite:PS00197	ScanProsite:PS00198	PFscan:PS51085	PFscan:PS51379	PANTHER:PTHR11921	SUPFAM:SSF46548
SUPFAM:SSF54292	InterPro:Succ_DH/fum_Rdtase_Fe-S	InterPro:Succ_DH/fum_Rdtase_N	TIGRFAMs:TIGR00384	UniParc:UPI00029520DF	SEG:seg

Description

Succinate dehydrogenase [ubiquinone] iron-sulfur subunit 1, mitochondrial [Source:GMGC_GENE;Acc:GSMUA_Achr7G02800_001]

Coordinates

chr7:+:2256423..2257115

Molecular Weight (calculated)

22680.4 Da

IEP (calculated)

7.029

GRAVY (calculated)

-0.060

Length

206 amino acids

Sequence
(BLAST)

001: MATARVLLRR GLLPGHRPSA AAATATVRLL LAQTHSSLSE SAEPKRLKTF SIYRWNPDRP DSPQMQEYEV DLNECGPMVL DALLKIKNEV DPSLSFRRSC
101: REGICGSCAM NIDGDNGLAC LTKIPAAESA AAAMITPLPH IFVVKDLVVD MTNFYSYNKD RAKLDGTHEC ILCACCSTSC PSCWWNPEAY LGPEALLHAH
201: RYVLLL

Best Arabidopsis Sequence Match ( AT3G27380.2 )
(BLAST)

001: MASGLIGRLV GTKPSKLATA ARLIPARWTS TGAEAETKAS SGGGRGSNLK TFQIYRWNPD NPGKPELQNY QIDLKDCGPM VLDALIKIKN EMDPSLTFRR
101: SCREGICGSC AMNIDGCNGL ACLTKIQDEA SETTITPLPH MFVIKDLVVD MTNFYNQYKS IEPWLKRKTP ASVPAKEILQ SKKDRAKLDG MYECILCACC
201: STSCPSYWWN PESYLGPAAL LHANRWISDS RDEYTKERLE AIDDEFKLYR CHTILNCARA CPKGLNPGKQ ITHIKQLQR

Arabidopsis Description

SDH2-1Succinate dehydrogenase [ubiquinone] iron-sulfur subunit 1, mitochondrial [Source:UniProtKB/Swiss-Prot;Acc:Q8LBZ7]
SUBAcon: [mitochondrion]

Hydropathy Plot

About CropPAL

The Protein Annotated Locations Database (CropPAL) houses large scale proteomic and GFP localization data from published experimental studies in Soybean (Glycine max), Maize (Zea mays), Wheat (Triticum aestivum), Barley (Hordeum vulgare), Rice (Oryza sativa), Field mustard (Brassica rapa), Canola (Brassica napus), Sorghum (Sorghum bicolor), Potato (Solanum tuberosum), Tomato (Solanum lycopersicum), Banana (Musa acuminata) and Wine grape (Vitis vinifera) as well as precomputed predictions for protein subcellular localizations using protein sequences.