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Tomato
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Tomato
Subcellular Localization
min:
: max

 
Winner_takes_all: nucleus, cytosol

Predictor Summary:
  • nucleus 1
  • mitochondrion 3
  • cytosol 4
Predictors GFP MS/MS Papers
Winner Takes All:cytosol, nucleus
Any Predictor:cytosol, mitochondrion, nucleus
BaCelLo:nucleus
EpiLoc:mitochondrion
MultiLoc:cytosol
Plant-mPloc:cytosol, mitochondrion
PProwler:mitochondrion
WoLF PSORT:cytosol
YLoc:cytosol
 nucleus: 28394025
msms PMID: 28394025 doi
AJM Howden, R Stam, V Martinez Heredia, GB Motion, S Ten Have, K Hodge, TM Marques Monteiro Amaro, E Huitema
Cell and Molecular Sciences, JHI, Invergowrie, Dundee, DD2 5DA, UK., Division of Plant Science, School of Life Sciences, University of Dundee at the James Hutton Institute (JHI), Invergowrie, Dundee, DD2 5DA, UK., Dundee Effector Consortium, JHI, Invergowrie, Dundee, DD2 5DA, UK., Section of Population Genetics, Technische Universität München, 85354, Freising, Germany., Wellcome Trust Centre for Gene Regulation and Expression, School of Life Sciences, University of Dundee, Dow Street, Dundee, DD1 5EH, UK.
PPI
No PPI Data
Homology

Paralog

locusIdentityHomology Identity

Ortholog

locusHomology SpeciesLocationIdentityHomology Identity
PGSC0003DMT400064279 Potato cytosol 42.52 95.58
Bra028469.1-P Field mustard cytosol 66.93 84.58
CDX67470 Canola cytosol, endoplasmic reticulum, extracellular, golgi, mitochondrion, plasma membrane, plastid, vacuole 28.74 82.02
GSMUA_Achr11P... Banana cytosol 63.78 80.6
Zm00001d011333_P001 Maize cytosol, golgi, mitochondrion 38.98 71.22
Solyc02g093680.2.1 Tomato extracellular, mitochondrion, plastid 71.65 66.42
AT3G27380.1 Thale cress mitochondrion 66.14 60.22
AT5G40650.1 Thale cress mitochondrion 66.14 60.0
Bra025272.1-P Field mustard mitochondrion 65.75 59.43
Bra033006.1-P Field mustard mitochondrion 65.35 59.07
GSMUA_Achr11P... Banana cytosol, extracellular 22.05 58.33
Bra039082.1-P Field mustard mitochondrion 51.57 58.22
GSMUA_Achr11P... Banana mitochondrion 62.6 56.18
GSMUA_Achr7P02800_001 Banana mitochondrion 38.58 47.57
CDY11704 Canola cytosol 11.42 44.62
VIT_14s0219g00150.t01 Wine grape mitochondrion 68.11 43.14
Solyc04g055030.1.1 Tomato mitochondrion 49.61 42.14
Solyc04g055020.1.1 Tomato mitochondrion 50.79 41.75
Zm00001d035136_P001 Maize mitochondrion 63.78 39.9
KRH33590 Soybean cytosol 26.77 39.53
Zm00001d049649_P001 Maize mitochondrion 62.6 39.07
Os08t0120000-05 Rice mitochondrion 53.15 38.57
HORVU7Hr1G074890.6 Barley mitochondrion 53.15 38.57
OQU79812 Sorghum mitochondrion 52.76 38.07
TraesCS7A01G314000.1 Wheat mitochondrion 52.76 36.61
TraesCS7B01G214900.1 Wheat mitochondrion 52.76 36.61
TraesCS7D01G311200.1 Wheat mitochondrion 52.76 36.61
GSMUA_Achr7P02810_001 Banana extracellular, vacuole 20.47 34.21
Zm00001d045148_P001 Maize mitochondrion 18.9 33.57
HORVU5Hr1G057270.1 Barley cytosol, mitochondrion, plastid 11.42 31.52
CDX67469 Canola mitochondrion 13.78 30.7
Os09t0370200-01 Rice mitochondrion 10.24 9.15
Protein Annotations
KEGG:00020+1.3.5.1KEGG:00190+1.3.5.1KEGG:00650+1.3.5.1KEGG:00720+1.3.5.1Gene3D:1.10.1060.10MapMan:2.3.6.1.2
InterPro:2Fe-2S_ferredoxin-like_sfInterPro:2Fe-2S_ferredoxin-typeInterPro:2Fe2S_fd_BSGene3D:3.10.20.30InterPro:4Fe4S_Fe-S-bdInterPro:4Fe4S_Fe_S_CS
InterPro:Beta-grasp_dom_sfGO:GO:0003674GO:GO:0003824GO:GO:0005488GO:GO:0005575GO:GO:0005622
GO:GO:0005623GO:GO:0005737GO:GO:0005739GO:GO:0005743GO:GO:0006091GO:GO:0006099
GO:GO:0008150GO:GO:0008152GO:GO:0008177GO:GO:0009055GO:GO:0009060GO:GO:0009987
GO:GO:0016020GO:GO:0016491GO:GO:0022904GO:GO:0046872GO:GO:0051536GO:GO:0051537
GO:GO:0051538GO:GO:0051539GO:GO:0055114InterPro:Helical_ferredxnInterPro:IPR001041InterPro:IPR009051
InterPro:IPR012675InterPro:IPR017896UniProt:K4BD69PFAM:PF13085PFAM:PF13534ScanProsite:PS00197
ScanProsite:PS00198PFscan:PS51085PFscan:PS51379PANTHER:PTHR11921PANTHER:PTHR11921:SF29SUPFAM:SSF46548
SUPFAM:SSF54292EnsemblPlantsGene:Solyc02g092730.2EnsemblPlants:Solyc02g092730.2.1InterPro:Succ_DH/fum_Rdtase_Fe-SInterPro:Succ_DH/fum_Rdtase_NTIGRFAMs:TIGR00384
UniParc:UPI0002768133:::::
Description
Succinate dehydrogenase [ubiquinone] iron-sulfur subunit, mitochondrial [Source:UniProtKB/TrEMBL;Acc:K4BD69]
Coordinates
chr2:-:53713582..53716123
Molecular Weight (calculated)
28719.9 Da
IEP (calculated)
7.118
GRAVY (calculated)
-0.110
Length
254 amino acids
Sequence
(BLAST)
001: MVLDALIKIK NEVDPSPTFR RSCREGICGS CAMNIDGCNG LACLTKISSD SVSTITPLPH MFVIKDLVVD MTNFYNQYKS IEPWLKRKTP APTPGKEIPQ
101: SKSDKAKLDG MYECILCACC STSCPSYWWN PESYLGPAAL LHANRWIMDS RDEHTLERLD AVNDEFKLYR CHTILNCSRA CPKGFNPGKL RTSSAWRWRL
201: EPALCSVVYQ SILLTLILED QVLPFPEPCV NMGFFCAPCC LIRDERCISP EILY
Best Arabidopsis Sequence Match ( AT5G40650.1 )
(BLAST)
001: MAFGLIGRVV GTKSSRLSTA ARLIPARWTS TGSEAQSKAS TGGGGASLKT FQIYRWNPDN PGKPELQDYK IDLKDCGPMV LDALIKIKNE MDPSLTFRRS
101: CREGICGSCA MNIDGCNGLA CLTKIESGSK ETTITPLPHM FVIKDLVVDM TNFYNQYKSI EPWLKRKNPA SVPGKEILQS KKDRAKLDGM YECILCACCS
201: TSCPSYWWNP ESYLGPAALL HANRWISDSR DEYTKERLEA IDDEFKLYRC HTILNCARAC PKGLNPGKQI THIKQLQKSG
Arabidopsis Description
SDH2-2Succinate dehydrogenase [ubiquinone] iron-sulfur subunit 2, mitochondrial [Source:UniProtKB/Swiss-Prot;Acc:Q8LB02]
SUBAcon: [mitochondrion]
Hydropathy Plot

About CropPAL

The Protein Annotated Locations Database (CropPAL) houses large scale proteomic and GFP localization data from published experimental studies in Soybean (Glycine max), Maize (Zea mays), Wheat (Triticum aestivum), Barley (Hordeum vulgare), Rice (Oryza sativa), Field mustard (Brassica rapa), Canola (Brassica napus), Sorghum (Sorghum bicolor), Potato (Solanum tuberosum), Tomato (Solanum lycopersicum), Banana (Musa acuminata) and Wine grape (Vitis vinifera) as well as precomputed predictions for protein subcellular localizations using protein sequences.