Factsheet for Zm00001d045148_P001

Subcellular Localization

min:

: max

Winner_takes_all: mitochondrion

Predictor Summary:

plastid 2
mitochondrion 6

Predictors

GFP

MS/MS

Papers

PPI

No PPI Data

Homology

Paralog

locus	Identity	Homology Identity

Ortholog

locus	Homology Species	Location	Identity	Homology Identity
CDX67469	Canola	mitochondrion	42.66	53.51
PGSC0003DMT400064279	Potato	cytosol	33.57	42.48
CDY11704	Canola	cytosol	18.18	40.0
Bra039082.1-P	Field mustard	mitochondrion	55.94	35.56
OQU79812	Sorghum	mitochondrion	85.31	34.66
KRH33590	Soybean	cytosol	40.56	33.72
Os08t0120000-05	Rice	mitochondrion	81.82	33.43
HORVU7Hr1G074890.6	Barley	mitochondrion	81.12	33.14
TraesCS7D01G311200.1	Wheat	mitochondrion	81.12	31.69
TraesCS7B01G214900.1	Wheat	mitochondrion	81.12	31.69
TraesCS7A01G314000.1	Wheat	mitochondrion	81.12	31.69
Zm00001d049649_P001	Maize	mitochondrion	87.41	30.71
Zm00001d035136_P001	Maize	mitochondrion	84.62	29.8
PGSC0003DMT400032862	Potato	mitochondrion	53.15	27.74
Solyc02g093680.2.1	Tomato	extracellular, mitochondrion, plastid	53.15	27.74
AT3G27380.1	Thale cress	mitochondrion	53.15	27.24
Bra033006.1-P	Field mustard	mitochondrion	52.45	26.69
Bra025272.1-P	Field mustard	mitochondrion	52.45	26.69
AT5G40650.1	Thale cress	mitochondrion	51.75	26.43
Bra028469.1-P	Field mustard	cytosol	32.87	23.38
Zm00001d005663_P001	Maize	mitochondrion	41.96	19.54
VIT_14s0219g00150.t01	Wine grape	mitochondrion	54.55	19.45
Zm00001d011333_P001	Maize	cytosol, golgi, mitochondrion	18.88	19.42
Solyc02g092730.2.1	Tomato	cytosol, nucleus	33.57	18.9
GSMUA_Achr7P02810_001	Banana	extracellular, vacuole	5.59	5.26
CDX67470	Canola	cytosol, endoplasmic reticulum, extracellular, golgi, mitochondrion, plasma membrane, plastid, vacuole	0.0	0.0

Protein Annotations

KEGG:00020+1.3.5.1	KEGG:00190+1.3.5.1	KEGG:00650+1.3.5.1	KEGG:00720+1.3.5.1	EntrezGene:103639746	InterPro:2Fe-2S_ferredoxin-like_sf
InterPro:2Fe-2S_ferredoxin-type	Gene3D:3.10.20.30	MapMan:35.1	ProteinID:AQL01672.1	InterPro:Beta-grasp_dom_sf	GO:GO:0003674
GO:GO:0003824	GO:GO:0005488	GO:GO:0006091	GO:GO:0006099	GO:GO:0008150	GO:GO:0008152
GO:GO:0009055	GO:GO:0009987	GO:GO:0016491	GO:GO:0022900	GO:GO:0051536	GO:GO:0055114
InterPro:IPR001041	InterPro:IPR012675	UniProt:K7V6D9	PFAM:PF13085	PFscan:PS51085	PANTHER:PTHR11921
PANTHER:PTHR11921:SF29	SUPFAM:SSF54292	InterPro:Succ_DH/fum_Rdtase_Fe-S	InterPro:Succ_DH/fum_Rdtase_N	TIGRFAMs:TIGR00384	UniParc:UPI0002214871
EnsemblPlantsGene:Zm00001d045148	EnsemblPlants:Zm00001d045148_P001	EnsemblPlants:Zm00001d045148_T001	SEG:seg	:	:

Description

succinate dehydrogenase8 succinate dehydrogenase8

Coordinates

chr9:-:14306889..14307320

Molecular Weight (calculated)

15161.0 Da

IEP (calculated)

9.656

GRAVY (calculated)

-0.218

Length

143 amino acids

Sequence
(BLAST)

001: MAVALLRRSS AARALLSPAL SSRLVASKPH SSSPASPPPV KAASSSKTFS IYRWDPDSPS TKPRLKDYQV DLSDYGSMVL DALLKIKNEQ DPSLTFRRSC
101: HEGICRSCAM NINGDNGLAC LTKISDASSA STVSPLPHIA SSA

Best Arabidopsis Sequence Match ( AT3G27380.1 )
(BLAST)

001: MASGLIGRLV GTKPSKLATA ARLIPARWTS TGAEAETKAS SGGGRGSNLK TFQIYRWNPD NPGKPELQNY QIDLKDCGPM VLDALIKIKN EMDPSLTFRR
101: SCREGICGSC AMNIDGCNGL ACLTKIQDEA SETTITPLPH MFVIKDLVVD MTNFYNQYKS IEPWLKRKTP ASVPAKEILQ SKKDRAKLDG MYECILCACC
201: STSCPSYWWN PESYLGPAAL LHANRWISDS RDEYTKERLE AIDDEFKLYR CHTILNCARA CPKGLNPGKQ ITHIKQLQR

Arabidopsis Description

SDH2-1Succinate dehydrogenase [ubiquinone] iron-sulfur subunit 1, mitochondrial [Source:UniProtKB/Swiss-Prot;Acc:Q8LBZ7]
SUBAcon: [mitochondrion]

Hydropathy Plot

About CropPAL

The Protein Annotated Locations Database (CropPAL) houses large scale proteomic and GFP localization data from published experimental studies in Soybean (Glycine max), Maize (Zea mays), Wheat (Triticum aestivum), Barley (Hordeum vulgare), Rice (Oryza sativa), Field mustard (Brassica rapa), Canola (Brassica napus), Sorghum (Sorghum bicolor), Potato (Solanum tuberosum), Tomato (Solanum lycopersicum), Banana (Musa acuminata) and Wine grape (Vitis vinifera) as well as precomputed predictions for protein subcellular localizations using protein sequences.