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Rice
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Rice
Subcellular Localization
min:
: max

 
Winner_takes_all: mitochondrion

Predictor Summary:
  • extracellular 1
  • endoplasmic reticulum 1
  • vacuole 1
  • plasma membrane 1
  • golgi 1
  • mitochondrion 8
  • cytosol 1
  • plastid 1
Predictors GFP MS/MS Papers
Winner Takes All:mitochondrion
Any Predictor:cytosol, mitochondrion, plastid, secretory
BaCelLo:secretory
EpiLoc:mitochondrion
iPSORT:mitochondrion
MultiLoc:mitochondrion
Plant-mPloc:cytosol, mitochondrion
Predotar:mitochondrion
PProwler:mitochondrion
TargetP:mitochondrion
WoLF PSORT:plastid
YLoc:mitochondrion
 golgi: 15069638
mitochondrion: 15069638
plastid: 15069638
vacuole: 15069638
mitochondrion: 19924544
msms PMID: 15069638 doi
N Tanaka, M Fujita, H Handa, S Murayama, M Uemura, Y Kawamura, T Mitsui, S Mikami, Y Tozawa, T Yoshinaga, S Komatsu
Department of Molecular Genetics, National Institute of Agrobiological Sciences, 305-8602, Tsukuba, Japan.
msms PMID: 19924544 doi
S Huang, NL Taylor, R Narsai, H Eubel, J Whelan, AH Millar
ARC Centre of Excellence in Plant Energy Biology, The University of Western Australia, M316, Crawley, WA, 6009, Australia.
PPI
No PPI Data
Homology

Paralog

locusIdentityHomology Identity

Ortholog

locusHomology SpeciesLocationIdentityHomology Identity
OQU79812 Sorghum mitochondrion 93.71 93.18
HORVU7Hr1G074890.6 Barley mitochondrion 90.57 90.57
TraesCS7B01G214900.1 Wheat mitochondrion 91.14 87.16
TraesCS7D01G311200.1 Wheat mitochondrion 90.86 86.89
PGSC0003DMT400064279 Potato cytosol 28.0 86.73
TraesCS7A01G314000.1 Wheat mitochondrion 90.57 86.61
Zm00001d045148_P001 Maize mitochondrion 33.43 81.82
Bra039082.1-P Field mustard mitochondrion 45.14 70.22
Bra028469.1-P Field mustard cytosol 38.57 67.16
PGSC0003DMT400032862 Potato mitochondrion 49.43 63.14
Solyc02g093680.2.1 Tomato extracellular, mitochondrion, plastid 49.14 62.77
AT5G40650.1 Thale cress mitochondrion 47.43 59.29
Bra025272.1-P Field mustard mitochondrion 47.14 58.72
AT3G27380.1 Thale cress mitochondrion 46.57 58.42
Bra033006.1-P Field mustard mitochondrion 46.86 58.36
CDX67469 Canola mitochondrion 18.57 57.02
Solyc02g092730.2.1 Tomato cytosol, nucleus 38.57 53.15
CDX67470 Canola cytosol, endoplasmic reticulum, extracellular, golgi, mitochondrion, plasma membrane, plastid, vacuole 12.29 48.31
KRH33590 Soybean cytosol 23.43 47.67
CDY11704 Canola cytosol 8.29 44.62
VIT_14s0219g00150.t01 Wine grape mitochondrion 48.29 42.14
Os09t0370300-01 Rice mitochondrion 36.86 41.48
GSMUA_Achr7P02810_001 Banana extracellular, vacuole 8.29 19.08
Os09t0370200-01 Rice mitochondrion 10.86 13.38
Protein Annotations
KEGG:00020+1.3.5.1KEGG:00190+1.3.5.1KEGG:00650+1.3.5.1KEGG:00720+1.3.5.1Gene3D:1.10.1060.10MapMan:17.7.1.2.12
MapMan:2.3.6.1.2InterPro:2Fe-2S_ferredoxin-like_sfInterPro:2Fe-2S_ferredoxin-typeInterPro:2Fe2S_fd_BSGene3D:3.10.20.30Gene3D:4.10.830.10
EntrezGene:4344541InterPro:4Fe4S_Fe-S-bdInterPro:4Fe4S_Fe_S_CSEMBL:AB017427EMBL:AK059789EMBL:AK102607
ProteinID:BAA82751.1ProteinID:BAD09056.1ProteinID:BAT03587.1InterPro:Beta-grasp_dom_sfGO:GO:0003674GO:GO:0003735
GO:GO:0003824GO:GO:0005198GO:GO:0005488GO:GO:0005575GO:GO:0005622GO:GO:0005623
GO:GO:0005737GO:GO:0005739GO:GO:0005743GO:GO:0005840GO:GO:0006091GO:GO:0006099
GO:GO:0006412GO:GO:0008150GO:GO:0008152GO:GO:0008177GO:GO:0009055GO:GO:0009058
GO:GO:0009987GO:GO:0016020GO:GO:0016491GO:GO:0019538GO:GO:0022900GO:GO:0046872
GO:GO:0051536GO:GO:0051537GO:GO:0051538GO:GO:0051539GO:GO:0055114InterPro:Helical_ferredxn
InterPro:IPR001041InterPro:IPR009051InterPro:IPR012675InterPro:IPR017896EnsemblPlantsGene:Os08g0120000EnsemblPlants:Os08t0120000-05
PFAM:PF00253PFAM:PF13085ScanProsite:PS00197ScanProsite:PS00198ScanProsite:PS00527PFscan:PS51085
PFscan:PS51379PANTHER:PTHR11921PANTHER:PTHR11921:SF29UniProt:Q9S7D3InterPro:Ribosomal_S14InterPro:Ribosomal_S14_CS
SUPFAM:SSF46548SUPFAM:SSF54292SUPFAM:SSF57716InterPro:Succ_DH/fum_Rdtase_Fe-SInterPro:Succ_DH/fum_Rdtase_NTIGRFAMs:TIGR00384
UniParc:UPI00000AD007RefSeq:XP_015650210.1SEG:seg:::
Description
SUCCINATE DEHYDROGENASE SUBUNIT 2Succinate dehydrogenase iron-protein subunit (SDHB). (Os08t0120000-01);Succinate dehydrogenase iron-protein subunit (SDHB). (Os08t0120000-02);Succinate dehydrogenase iron-protein subunit (SDHB). (Os08t0120000-04);Similar to Chimeric SDH2-RPS14 protein. (Os08t0120000-05)
Coordinates
chr8:-:1092691..1094686
Molecular Weight (calculated)
39143.7 Da
IEP (calculated)
10.312
GRAVY (calculated)
-0.425
Length
350 amino acids
Sequence
(BLAST)
001: MAAAALLRRS PAARALLSPA LSSRLVASKP HSSSPAPPPP PSKAGANTKT FSIYRWDPDS PSTKPHLKDY KVDLSDCGPM VLDVLLKIKN EQDPSLTFRR
101: SCREGICGSC AMNIDGDNGL ACLTKISSAS SASTISPLPH MFVIKDLVVD MTNFYNQYKS VEPWLKRKDA PPQPGKEIPQ TKADRAKLDG MYECILCACC
201: STSCPSYWWN PEEYLGPAAL LHANRLPLLG TLIKPKPNMF MHIQARGYHG VSEKRNLLDH KRRLLAAKYE LKGKLYKAVC RDPDLPADMQ DQFRYKLSKL
301: PRNSSMTRLR NRCIFTGRSR AVYKKFRMSR IVFRSLANKG ELLGVKKASW
Best Arabidopsis Sequence Match ( AT5G40650.2 )
(BLAST)
001: MAFGLIGRVV GTKSSRLSTA ARLIPARWTS TGSEAQSKAS TGGGGASLKT FQIYRWNPDN PGKPELQDYK IDLKDCGPMV LDALIKIKNE MDPSLTFRRS
101: CREGICGSCA MNIDGCNGLA CLTKIESGSK ETTITPLPHM FVIKDLVVDM TNFYNQYKSI EPWLKRKNPA SVPGKEILQS KKDRAKLDGM YECILCACCS
201: TSCPSYWWNP ESYLGPAALL HANR
Arabidopsis Description
SDH2-2Succinate dehydrogenase [ubiquinone] iron-sulfur subunit 2, mitochondrial [Source:UniProtKB/Swiss-Prot;Acc:Q8LB02]
SUBAcon: [mitochondrion]
Hydropathy Plot

About CropPAL

The Protein Annotated Locations Database (CropPAL) houses large scale proteomic and GFP localization data from published experimental studies in Soybean (Glycine max), Maize (Zea mays), Wheat (Triticum aestivum), Barley (Hordeum vulgare), Rice (Oryza sativa), Field mustard (Brassica rapa), Canola (Brassica napus), Sorghum (Sorghum bicolor), Potato (Solanum tuberosum), Tomato (Solanum lycopersicum), Banana (Musa acuminata) and Wine grape (Vitis vinifera) as well as precomputed predictions for protein subcellular localizations using protein sequences.