CropPAL

Subcellular Localization

min:

: max

Winner_takes_all: mitochondrion

Predictor Summary:

plastid 3
mitochondrion 8

Predictors

GFP

MS/MS

Papers

PPI

No PPI Data

Homology

Paralog

locus	Identity	Homology Identity

Ortholog

locus	Homology Species	Location	Identity	Homology Identity
Os08t0120000-05	Rice	mitochondrion	93.18	93.71
HORVU7Hr1G074890.6	Barley	mitochondrion	89.77	90.29
TraesCS7B01G214900.1	Wheat	mitochondrion	90.34	86.89
TraesCS7D01G311200.1	Wheat	mitochondrion	90.06	86.61
TraesCS7A01G314000.1	Wheat	mitochondrion	89.77	86.34
PGSC0003DMT400064279	Potato	cytosol	27.56	85.84
Zm00001d045148_P001	Maize	mitochondrion	34.66	85.31
Bra039082.1-P	Field mustard	mitochondrion	44.32	69.33
Bra028469.1-P	Field mustard	cytosol	38.07	66.67
PGSC0003DMT400032862	Potato	mitochondrion	48.01	61.68
Solyc02g093680.2.1	Tomato	extracellular, mitochondrion, plastid	47.73	61.31
Bra033006.1-P	Field mustard	mitochondrion	46.59	58.36
AT5G40650.1	Thale cress	mitochondrion	46.31	58.21
AT3G27380.1	Thale cress	mitochondrion	46.02	58.06
Bra025272.1-P	Field mustard	mitochondrion	46.31	58.01
CDX67469	Canola	mitochondrion	18.75	57.89
Solyc02g092730.2.1	Tomato	cytosol, nucleus	38.07	52.76
CDX67470	Canola	cytosol, endoplasmic reticulum, extracellular, golgi, mitochondrion, plasma membrane, plastid, vacuole	12.22	48.31
KRH33590	Soybean	cytosol	23.58	48.26
CDY11704	Canola	cytosol	8.52	46.15
VIT_14s0219g00150.t01	Wine grape	mitochondrion	48.58	42.64
OQU89416	Sorghum	mitochondrion	36.08	40.97
GSMUA_Achr7P02810_001	Banana	extracellular, vacuole	7.95	18.42

Protein Annotations

KEGG:00020+1.3.5.1	KEGG:00190+1.3.5.1	KEGG:00650+1.3.5.1	KEGG:00720+1.3.5.1	Gene3D:1.10.1060.10	MapMan:17.7.1.2.12
MapMan:2.3.6.1.2	InterPro:2Fe-2S_ferredoxin-like_sf	InterPro:2Fe-2S_ferredoxin-type	InterPro:2Fe2S_fd_BS	Gene3D:3.10.20.30	Gene3D:4.10.830.10
InterPro:4Fe4S_Fe-S-bd	InterPro:4Fe4S_Fe_S_CS	UniProt:A0A1Z5R7Q4	InterPro:Beta-grasp_dom_sf	GO:GO:0003674	GO:GO:0003735
GO:GO:0003824	GO:GO:0005198	GO:GO:0005488	GO:GO:0005575	GO:GO:0005622	GO:GO:0005623
GO:GO:0005737	GO:GO:0005739	GO:GO:0005743	GO:GO:0005840	GO:GO:0006091	GO:GO:0006099
GO:GO:0006412	GO:GO:0008150	GO:GO:0008152	GO:GO:0008177	GO:GO:0009055	GO:GO:0009058
GO:GO:0009987	GO:GO:0016020	GO:GO:0016491	GO:GO:0019538	GO:GO:0022900	GO:GO:0046872
GO:GO:0051536	GO:GO:0051537	GO:GO:0051538	GO:GO:0051539	GO:GO:0055114	InterPro:Helical_ferredxn
InterPro:IPR001041	InterPro:IPR009051	InterPro:IPR012675	InterPro:IPR017896	EnsemblPlants:OQU79812	ProteinID:OQU79812
ProteinID:OQU79812.1	PFAM:PF00253	PFAM:PF13085	ScanProsite:PS00197	ScanProsite:PS00198	ScanProsite:PS00527
PFscan:PS51085	PFscan:PS51379	PANTHER:PTHR11921	PANTHER:PTHR11921:SF29	InterPro:Ribosomal_S14	InterPro:Ribosomal_S14_CS
EnsemblPlantsGene:SORBI_3007G023400	SUPFAM:SSF46548	SUPFAM:SSF54292	SUPFAM:SSF57716	InterPro:Succ_DH/fum_Rdtase_Fe-S	InterPro:Succ_DH/fum_Rdtase_N
TIGRFAMs:TIGR00384	UniParc:UPI0001C80D07	SEG:seg	:	:	:

Description

hypothetical protein

Coordinates

chr7:-:2111376..2113358

Molecular Weight (calculated)

39606.2 Da

IEP (calculated)

10.371

GRAVY (calculated)

-0.493

Length

352 amino acids

Sequence
(BLAST)

001: MAAAALLRRS SAARTLLSPA LSSRLVASKP HSSSPAPPPP PPAAKAAANT KTFSIYRWDP DSPSTKPHLK DYQVDLSDCG PMVLDALLKI KNEQDPSLTF
101: RRSCREGICG SCAMNIDGDN GLACLTKISS ASSASTVSPL PHMFVIKDLV VDMTNFYSQY KSVEPWLKRK DPPPQQGKEI PQTKADRAKL DGMYECILCA
201: CCSTSCPSYW WNPEEYLGPA ALLHANRLPL WGTLIKPKPN MFMHLQARGY HGVSEKRNLR DHKRRLLAEK YELRGKLYKA VCRDPDLPLD MREKFRYKLS
301: KLPRNSSMTR LRNRCIFTGR SRAVYKKFRM SRIVFRTLAN KGELTGVKKA SW

Best Arabidopsis Sequence Match ( AT5G40650.1 )
(BLAST)

001: MAFGLIGRVV GTKSSRLSTA ARLIPARWTS TGSEAQSKAS TGGGGASLKT FQIYRWNPDN PGKPELQDYK IDLKDCGPMV LDALIKIKNE MDPSLTFRRS
101: CREGICGSCA MNIDGCNGLA CLTKIESGSK ETTITPLPHM FVIKDLVVDM TNFYNQYKSI EPWLKRKNPA SVPGKEILQS KKDRAKLDGM YECILCACCS
201: TSCPSYWWNP ESYLGPAALL HANRWISDSR DEYTKERLEA IDDEFKLYRC HTILNCARAC PKGLNPGKQI THIKQLQKSG

Arabidopsis Description

SDH2-2Succinate dehydrogenase [ubiquinone] iron-sulfur subunit 2, mitochondrial [Source:UniProtKB/Swiss-Prot;Acc:Q8LB02]
SUBAcon: [mitochondrion]

Hydropathy Plot

About CropPAL

The Protein Annotated Locations Database (CropPAL) houses large scale proteomic and GFP localization data from published experimental studies in Soybean (Glycine max), Maize (Zea mays), Wheat (Triticum aestivum), Barley (Hordeum vulgare), Rice (Oryza sativa), Field mustard (Brassica rapa), Canola (Brassica napus), Sorghum (Sorghum bicolor), Potato (Solanum tuberosum), Tomato (Solanum lycopersicum), Banana (Musa acuminata) and Wine grape (Vitis vinifera) as well as precomputed predictions for protein subcellular localizations using protein sequences.