Factsheet for PGSC0003DMT400032862

Subcellular Localization

min:

: max

Winner_takes_all: mitochondrion

Predictor Summary:

plastid 1
mitochondrion 9
cytosol 1

Predictors

GFP

MS/MS

Papers

PPI

No PPI Data

Homology

Paralog

locus	Identity	Homology Identity

Ortholog

locus	Homology Species	Location	Identity	Homology Identity
Solyc02g093680.2.1	Tomato	extracellular, mitochondrion, plastid	98.91	98.91
PGSC0003DMT400064279	Potato	cytosol	40.51	98.23
Bra028469.1-P	Field mustard	cytosol	64.23	87.56
CDX67470	Canola	cytosol, endoplasmic reticulum, extracellular, golgi, mitochondrion, plasma membrane, plastid, vacuole	28.1	86.52
GSMUA_Achr11P...	Banana	cytosol	60.95	83.08
AT5G40650.1	Thale cress	mitochondrion	79.2	77.5
AT3G27380.1	Thale cress	mitochondrion	78.83	77.42
Bra039082.1-P	Field mustard	mitochondrion	62.04	75.56
Bra025272.1-P	Field mustard	mitochondrion	77.37	75.44
Bra033006.1-P	Field mustard	mitochondrion	77.01	75.09
GSMUA_Achr11P...	Banana	mitochondrion	72.26	69.96
Zm00001d011333_P001	Maize	cytosol, golgi, mitochondrion	35.4	69.78
GSMUA_Achr7P02800_001	Banana	mitochondrion	46.35	61.65
GSMUA_Achr11P...	Banana	cytosol, extracellular	21.53	61.46
CDX67469	Canola	mitochondrion	24.82	59.65
VIT_14s0219g00150.t01	Wine grape	mitochondrion	80.29	54.86
KRH33590	Soybean	cytosol	33.58	53.49
Zm00001d045148_P001	Maize	mitochondrion	27.74	53.15
PGSC0003DMT400053128	Potato	mitochondrion	48.54	51.55
Os08t0120000-05	Rice	mitochondrion	63.14	49.43
HORVU7Hr1G074890.6	Barley	mitochondrion	62.77	49.14
Zm00001d035136_P001	Maize	mitochondrion	72.63	49.01
Zm00001d049649_P001	Maize	mitochondrion	71.53	48.16
OQU79812	Sorghum	mitochondrion	61.68	48.01
TraesCS7A01G314000.1	Wheat	mitochondrion	62.41	46.72
TraesCS7B01G214900.1	Wheat	mitochondrion	62.41	46.72
TraesCS7D01G311200.1	Wheat	mitochondrion	62.41	46.72
HORVU5Hr1G057270.1	Barley	cytosol, mitochondrion, plastid	15.33	45.65
CDY11704	Canola	cytosol	10.58	44.62
PGSC0003DMT400086943	Potato	mitochondrion	48.18	44.15
GSMUA_Achr7P02810_001	Banana	extracellular, vacuole	19.71	35.53
Os09t0370200-01	Rice	mitochondrion	13.14	12.68

Protein Annotations

KEGG:00020+1.3.5.1	KEGG:00190+1.3.5.1	KEGG:00650+1.3.5.1	KEGG:00720+1.3.5.1	Gene3D:1.10.1060.10	EntrezGene:102589264
MapMan:2.3.6.1.2	InterPro:2Fe-2S_ferredoxin-like_sf	InterPro:2Fe-2S_ferredoxin-type	InterPro:2Fe2S_fd_BS	Gene3D:3.10.20.30	InterPro:4Fe4S_Fe-S-bd
InterPro:4Fe4S_Fe_S_CS	InterPro:Beta-grasp_dom_sf	GO:GO:0003674	GO:GO:0003824	GO:GO:0005488	GO:GO:0005575
GO:GO:0005622	GO:GO:0005623	GO:GO:0005737	GO:GO:0005739	GO:GO:0005743	GO:GO:0006091
GO:GO:0006099	GO:GO:0008150	GO:GO:0008152	GO:GO:0008177	GO:GO:0009055	GO:GO:0009987
GO:GO:0016020	GO:GO:0016491	GO:GO:0022900	GO:GO:0046872	GO:GO:0051536	GO:GO:0051537
GO:GO:0051538	GO:GO:0051539	GO:GO:0055114	InterPro:Helical_ferredxn	InterPro:IPR001041	InterPro:IPR009051
InterPro:IPR012675	InterPro:IPR017896	UniProt:M1AY79	PFAM:PF13085	PFAM:PF13534	EnsemblPlantsGene:PGSC0003DMG400012624
PGSC:PGSC0003DMG400012624	EnsemblPlants:PGSC0003DMT400032862	ScanProsite:PS00197	ScanProsite:PS00198	PFscan:PS51085	PFscan:PS51379
PANTHER:PTHR11921	PANTHER:PTHR11921:SF29	SUPFAM:SSF46548	SUPFAM:SSF54292	InterPro:Succ_DH/fum_Rdtase_Fe-S	InterPro:Succ_DH/fum_Rdtase_N
TIGRFAMs:TIGR00384	UniParc:UPI0002955E63	RefSeq:XP_006338645.1	:	:	:

Description

Mitochondrial succinate dehydrogenase iron sulfur subunit [Source:PGSC_GENE;Acc:PGSC0003DMG400012624]

Coordinates

chr2:+:47640305..47643888

Molecular Weight (calculated)

30817.2 Da

IEP (calculated)

8.426

GRAVY (calculated)

-0.420

Length

274 amino acids

Sequence
(BLAST)

001: MATGLIRRAI SRVQSSAPAA RLLVARAHAS DSQAQQVESK PNLKSFQIYR WTPDNPGKPE LKEYKIDLKE CGPMVLDALI KIKNEIDPTL TFRRSCREGI
101: CGSCAMNIDG CNGLACLTKI SSDSESTITP LPHMFVIKDL VVDMTNFYNQ YKSIEPWLKR KTPAPTPGKE IPQSKSDRAK LDGMYECILC ACCSTSCPSY
201: WWNPESYLGP AALLHANRWI MDSRDEFTQE RLDAVNDEFK LYRCHTILNC SRACPKGLNP GKHIQNIKKL EMAP

Best Arabidopsis Sequence Match ( AT5G40650.1 )
(BLAST)

001: MAFGLIGRVV GTKSSRLSTA ARLIPARWTS TGSEAQSKAS TGGGGASLKT FQIYRWNPDN PGKPELQDYK IDLKDCGPMV LDALIKIKNE MDPSLTFRRS
101: CREGICGSCA MNIDGCNGLA CLTKIESGSK ETTITPLPHM FVIKDLVVDM TNFYNQYKSI EPWLKRKNPA SVPGKEILQS KKDRAKLDGM YECILCACCS
201: TSCPSYWWNP ESYLGPAALL HANRWISDSR DEYTKERLEA IDDEFKLYRC HTILNCARAC PKGLNPGKQI THIKQLQKSG

Arabidopsis Description

SDH2-2Succinate dehydrogenase [ubiquinone] iron-sulfur subunit 2, mitochondrial [Source:UniProtKB/Swiss-Prot;Acc:Q8LB02]
SUBAcon: [mitochondrion]

Hydropathy Plot

About CropPAL

The Protein Annotated Locations Database (CropPAL) houses large scale proteomic and GFP localization data from published experimental studies in Soybean (Glycine max), Maize (Zea mays), Wheat (Triticum aestivum), Barley (Hordeum vulgare), Rice (Oryza sativa), Field mustard (Brassica rapa), Canola (Brassica napus), Sorghum (Sorghum bicolor), Potato (Solanum tuberosum), Tomato (Solanum lycopersicum), Banana (Musa acuminata) and Wine grape (Vitis vinifera) as well as precomputed predictions for protein subcellular localizations using protein sequences.