Factsheet for VIT_14s0219g00150.t01

Subcellular Localization

min:

: max

Winner_takes_all: mitochondrion

Predictor Summary:

plastid 1
mitochondrion 9
cytosol 1

Predictors

GFP

MS/MS

Papers

PPI

No PPI Data

Homology

Paralog

locus	Identity	Homology Identity

Ortholog

locus	Homology Species	Location	Identity	Homology Identity
PGSC0003DMT400064279	Potato	cytosol	25.69	91.15
CDX67470	Canola	cytosol, endoplasmic reticulum, extracellular, golgi, mitochondrion, plasma membrane, plastid, vacuole	20.2	91.01
CDY48359	Canola	cytosol	44.89	90.0
CDY20051	Canola	cytosol	44.89	90.0
Bra028469.1-P	Field mustard	cytosol	44.64	89.05
GSMUA_Achr11P...	Banana	cytosol	42.64	85.07
KRH07075	Soybean	cytosol	47.13	80.77
PGSC0003DMT400032862	Potato	mitochondrion	54.86	80.29
Solyc02g093680.2.1	Tomato	extracellular, mitochondrion, plastid	54.86	80.29
KRG94380	Soybean	mitochondrion	54.86	79.42
AT3G27380.1	Thale cress	mitochondrion	54.61	78.49
CDY00158	Canola	cytosol	39.65	78.33
AT5G40650.1	Thale cress	mitochondrion	54.61	78.21
CDX83688	Canola	mitochondrion	54.36	78.14
CDY34152	Canola	mitochondrion	54.61	77.94
Bra033006.1-P	Field mustard	mitochondrion	54.61	77.94
CDY13709	Canola	mitochondrion	54.36	77.58
Bra025272.1-P	Field mustard	mitochondrion	54.36	77.58
Bra039082.1-P	Field mustard	mitochondrion	42.39	75.56
GSMUA_Achr11P...	Banana	mitochondrion	49.88	70.67
Zm00001d011333_P001	Maize	cytosol, golgi, mitochondrion	24.19	69.78
Solyc02g092730.2.1	Tomato	cytosol, nucleus	43.14	68.11
CDX67469	Canola	mitochondrion	17.96	63.16
GSMUA_Achr11P...	Banana	cytosol, extracellular	14.96	62.5
GSMUA_Achr7P02800_001	Banana	mitochondrion	31.42	61.16
Zm00001d045148_P001	Maize	mitochondrion	19.45	54.55
KRH33590	Soybean	cytosol	22.94	53.49
Zm00001d035136_P001	Maize	mitochondrion	51.37	50.74
Zm00001d049649_P001	Maize	mitochondrion	50.37	49.63
HORVU7Hr1G074890.6	Barley	mitochondrion	42.64	48.86
OQU79812	Sorghum	mitochondrion	42.64	48.58
Os08t0120000-05	Rice	mitochondrion	42.14	48.29
HORVU5Hr1G057270.1	Barley	cytosol, mitochondrion, plastid	10.97	47.83
VIT_00s0304g00040.t01	Wine grape	mitochondrion	33.67	47.7
CDY11704	Canola	cytosol	7.73	47.69
GSMUA_Achr10P...	Banana	cytosol, nucleus, plastid	11.22	46.88
TraesCS7A01G314000.1	Wheat	mitochondrion	42.64	46.72
TraesCS7B01G214900.1	Wheat	mitochondrion	42.64	46.72
TraesCS7D01G311200.1	Wheat	mitochondrion	42.64	46.72
GSMUA_Achr7P02810_001	Banana	extracellular, vacuole	13.47	35.53
Os09t0370200-01	Rice	mitochondrion	9.73	13.73

Protein Annotations

KEGG:00020+1.3.5.1	KEGG:00190+1.3.5.1	KEGG:00650+1.3.5.1	KEGG:00720+1.3.5.1	Gene3D:1.10.1060.10	MapMan:2.3.6.1.2
InterPro:2Fe-2S_ferredoxin-like_sf	InterPro:2Fe-2S_ferredoxin-type	InterPro:2Fe2S_fd_BS	Gene3D:3.10.20.30	InterPro:4Fe4S_Fe-S-bd	InterPro:4Fe4S_Fe_S_CS
InterPro:Beta-grasp_dom_sf	ProteinID:CCB44549	ProteinID:CCB44549.1	UniProt:F6GX63	EMBL:FN594962	GO:GO:0003674
GO:GO:0003824	GO:GO:0005488	GO:GO:0005575	GO:GO:0005622	GO:GO:0005623	GO:GO:0005737
GO:GO:0005739	GO:GO:0005743	GO:GO:0006091	GO:GO:0006099	GO:GO:0008150	GO:GO:0008152
GO:GO:0008177	GO:GO:0009055	GO:GO:0009060	GO:GO:0009987	GO:GO:0016020	GO:GO:0016021
GO:GO:0016491	GO:GO:0022904	GO:GO:0046872	GO:GO:0051536	GO:GO:0051537	GO:GO:0051538
GO:GO:0051539	GO:GO:0055114	InterPro:Helical_ferredxn	InterPro:IPR001041	InterPro:IPR009051	InterPro:IPR012675
InterPro:IPR017896	PFAM:PF13085	ScanProsite:PS00197	ScanProsite:PS00198	PFscan:PS51085	PFscan:PS51379
PANTHER:PTHR11921	PANTHER:PTHR11921:SF29	SUPFAM:SSF46548	SUPFAM:SSF54292	InterPro:Succ_DH/fum_Rdtase_Fe-S	InterPro:Succ_DH/fum_Rdtase_N
TIGRFAMs:TIGR00384	TMHMM:TMhelix	UniParc:UPI000210AC66	ArrayExpress:VIT_14s0219g00150	EnsemblPlantsGene:VIT_14s0219g00150	EnsemblPlants:VIT_14s0219g00150.t01

Description

Succinate dehydrogenase [ubiquinone] iron-sulfur subunit, mitochondrial [Source:UniProtKB/TrEMBL;Acc:F6GX63]

Coordinates

chr14:-:26421410..26425318

Molecular Weight (calculated)

45319.6 Da

IEP (calculated)

9.027

GRAVY (calculated)

-0.034

Length

401 amino acids

Sequence
(BLAST)

001: MATGLLRRGM SRVPGQAAKL LRSRAHATGA QSSEVNSEVA KTLKTFSIYR WNPDNPSKPE LQNYQINLKD CGPMVLDALI KIKNEMDPTL TFRRSCREGI
101: CGSCAMNIDG CNGLACLTKI PSGESSTVTP LPHMFVIKDL VVDMTNFYNQ YKSIEPWLKR KTPPPTPGKE IPQSKKDRAK LDGMYECILC ACCSTSCPSY
201: WWNPESYLGP AALLHANRKR PYTSSIKMPG YHIFERGWMV GATRIGDGGA MVNLFFFIVA LILWFSNSLV RVFWMLPHLV KDMLYCQHVN LISSMAGRGL
301: GFFYAFCFLF GVILLWCAFM LSIYHCYTPY SVGMLLNISF IRLWISDSRD EYTKERLDAV CDEFKLYRCH TILNCARACP KGLNPGKQIA TIKQRHIADA
401: I

Best Arabidopsis Sequence Match ( AT3G27380.2 )
(BLAST)

001: MASGLIGRLV GTKPSKLATA ARLIPARWTS TGAEAETKAS SGGGRGSNLK TFQIYRWNPD NPGKPELQNY QIDLKDCGPM VLDALIKIKN EMDPSLTFRR
101: SCREGICGSC AMNIDGCNGL ACLTKIQDEA SETTITPLPH MFVIKDLVVD MTNFYNQYKS IEPWLKRKTP ASVPAKEILQ SKKDRAKLDG MYECILCACC
201: STSCPSYWWN PESYLGPAAL LHANRWISDS RDEYTKERLE AIDDEFKLYR CHTILNCARA CPKGLNPGKQ ITHIKQLQR

Arabidopsis Description

SDH2-1Succinate dehydrogenase [ubiquinone] iron-sulfur subunit 1, mitochondrial [Source:UniProtKB/Swiss-Prot;Acc:Q8LBZ7]
SUBAcon: [mitochondrion]

Hydropathy Plot

About CropPAL

The Protein Annotated Locations Database (CropPAL) houses large scale proteomic and GFP localization data from published experimental studies in Soybean (Glycine max), Maize (Zea mays), Wheat (Triticum aestivum), Barley (Hordeum vulgare), Rice (Oryza sativa), Field mustard (Brassica rapa), Canola (Brassica napus), Sorghum (Sorghum bicolor), Potato (Solanum tuberosum), Tomato (Solanum lycopersicum), Banana (Musa acuminata) and Wine grape (Vitis vinifera) as well as precomputed predictions for protein subcellular localizations using protein sequences.