CropPAL

Subcellular Localization

min:

: max

Winner_takes_all: cytosol

Predictor Summary:

nucleus 1
cytosol 2
mitochondrion 1

Predictors

GFP

MS/MS

Papers

Winner Takes All:	cytosol
Any Predictor:	cytosol, mitochondrion
BaCelLo:	nucleus
MultiLoc:	cytosol
PProwler:	mitochondrion
YLoc:	cytosol

PPI

No PPI Data

Homology

Paralog

locus	Identity	Homology Identity

Ortholog

locus	Homology Species	Location	Identity	Homology Identity
Bra028469.1-P	Field mustard	cytosol	73.5	85.57
CDY48359	Canola	cytosol	71.79	84.0
CDY20051	Canola	cytosol	71.37	83.5
KRG94380	Soybean	mitochondrion	91.88	77.62
CDY00158	Canola	cytosol	61.54	70.94
AT5G40650.1	Thale cress	mitochondrion	83.76	70.0
AT3G27380.1	Thale cress	mitochondrion	82.91	69.53
CDX83688	Canola	mitochondrion	82.48	69.18
Bra033006.1-P	Field mustard	mitochondrion	82.91	69.04
CDY34152	Canola	mitochondrion	82.91	69.04
Bra025272.1-P	Field mustard	mitochondrion	82.48	68.68
CDY13709	Canola	mitochondrion	82.48	68.68
KRH33590	Soybean	cytosol	41.45	56.4
VIT_14s0219g00150.t01	Wine grape	mitochondrion	80.77	47.13
GSMUA_Achr10P...	Banana	cytosol, nucleus, plastid	18.8	45.83

Protein Annotations

KEGG:00020+1.3.5.1	KEGG:00190+1.3.5.1	KEGG:00650+1.3.5.1	KEGG:00720+1.3.5.1	Gene3D:1.10.1060.10	MapMan:2.3.6.1.2
InterPro:2Fe-2S_ferredoxin-like_sf	InterPro:2Fe-2S_ferredoxin-type	InterPro:2Fe2S_fd_BS	Gene3D:3.10.20.30	InterPro:4Fe4S_Fe-S-bd	InterPro:4Fe4S_Fe_S_CS
UniProt:A0A0R0FV32	EMBL:ACUP02009930	InterPro:Beta-grasp_dom_sf	EnsemblPlantsGene:GLYMA_16G066200	GO:GO:0003674	GO:GO:0003824
GO:GO:0005488	GO:GO:0005575	GO:GO:0005622	GO:GO:0005623	GO:GO:0005737	GO:GO:0005739
GO:GO:0005743	GO:GO:0006091	GO:GO:0006099	GO:GO:0008150	GO:GO:0008152	GO:GO:0008177
GO:GO:0009055	GO:GO:0009987	GO:GO:0016020	GO:GO:0016491	GO:GO:0022900	GO:GO:0046872
GO:GO:0051536	GO:GO:0051537	GO:GO:0051538	GO:GO:0051539	GO:GO:0055114	InterPro:Helical_ferredxn
InterPro:IPR001041	InterPro:IPR009051	InterPro:IPR012675	InterPro:IPR017896	EnsemblPlants:KRH07075	ProteinID:KRH07075
ProteinID:KRH07075.1	PFAM:PF13085	PFAM:PF13534	ScanProsite:PS00197	ScanProsite:PS00198	PFscan:PS51085
PFscan:PS51379	PANTHER:PTHR11921	MetaCyc:PWY-3781	MetaCyc:PWY-4302	MetaCyc:PWY-561	MetaCyc:PWY-5690
MetaCyc:PWY-6728	MetaCyc:PWY-6969	MetaCyc:PWY-7254	MetaCyc:PWY-7279	SUPFAM:SSF46548	SUPFAM:SSF54292
InterPro:Succ_DH/fum_Rdtase_Fe-S	InterPro:Succ_DH/fum_Rdtase_N	TIGRFAMs:TIGR00384	UniParc:UPI0006EDD192	:	:

Description

hypothetical protein

Coordinates

chr16:-:6576967..6580036

Molecular Weight (calculated)

26498.0 Da

IEP (calculated)

8.316

GRAVY (calculated)

-0.518

Length

234 amino acids

Sequence
(BLAST)

001: AQQVEPKARE TPTLKTFQIY RWNPENPSKP ELKDYQINLK ECGPMVLDAL IKIKNEIDPS LTFRRSCREG ICGSCAMNID GCNGLACLTK IPSEKNSAAT
101: TITPLPHMFV IKDLSIEPWL RKNPPVPGKE ILQSKKEREK LDGMYECILC ACCSTSCPSY WWNPESYLGP AALLHANRWI SDSRDEYTKE RLDAINDEFK
201: LYRCHTILNC ARACPKGLNP GKQISHIKSL QPKA

Best Arabidopsis Sequence Match ( AT5G40650.1 )
(BLAST)

001: MAFGLIGRVV GTKSSRLSTA ARLIPARWTS TGSEAQSKAS TGGGGASLKT FQIYRWNPDN PGKPELQDYK IDLKDCGPMV LDALIKIKNE MDPSLTFRRS
101: CREGICGSCA MNIDGCNGLA CLTKIESGSK ETTITPLPHM FVIKDLVVDM TNFYNQYKSI EPWLKRKNPA SVPGKEILQS KKDRAKLDGM YECILCACCS
201: TSCPSYWWNP ESYLGPAALL HANRWISDSR DEYTKERLEA IDDEFKLYRC HTILNCARAC PKGLNPGKQI THIKQLQKSG

Arabidopsis Description

SDH2-2Succinate dehydrogenase [ubiquinone] iron-sulfur subunit 2, mitochondrial [Source:UniProtKB/Swiss-Prot;Acc:Q8LB02]
SUBAcon: [mitochondrion]

Hydropathy Plot

About CropPAL

The Protein Annotated Locations Database (CropPAL) houses large scale proteomic and GFP localization data from published experimental studies in Soybean (Glycine max), Maize (Zea mays), Wheat (Triticum aestivum), Barley (Hordeum vulgare), Rice (Oryza sativa), Field mustard (Brassica rapa), Canola (Brassica napus), Sorghum (Sorghum bicolor), Potato (Solanum tuberosum), Tomato (Solanum lycopersicum), Banana (Musa acuminata) and Wine grape (Vitis vinifera) as well as precomputed predictions for protein subcellular localizations using protein sequences.