CropPAL

Subcellular Localization

min:

: max

Winner_takes_all: cytosol

Predictor Summary:

nucleus 1
cytosol 3
mitochondrion 1

Predictors

GFP

MS/MS

Papers

Winner Takes All:	cytosol
Any Predictor:	cytosol, nucleus
BaCelLo:	nucleus
MultiLoc:	cytosol
PProwler:	mitochondrion
WoLF PSORT:	cytosol
YLoc:	cytosol

PPI

No PPI Data

Homology

Paralog

locus	Identity	Homology Identity

Ortholog

locus	Homology Species	Location	Identity	Homology Identity
CDY20051	Canola	cytosol	99.0	99.0
CDX67470	Canola	cytosol, endoplasmic reticulum, extracellular, golgi, mitochondrion, plasma membrane, plastid, vacuole	43.0	96.63
CDY00158	Canola	cytosol	85.0	83.74
KRH07075	Soybean	cytosol	84.0	71.79
CDX83688	Canola	mitochondrion	98.5	70.61
CDY13709	Canola	mitochondrion	99.0	70.46
CDY34152	Canola	mitochondrion	97.5	69.39
KRG94380	Soybean	mitochondrion	91.5	66.06
CDY06159	Canola	cytosol	38.5	57.46
CDY11704	Canola	cytosol	16.0	49.23
CDY11705	Canola	plastid	24.5	47.12
GSMUA_Achr10P...	Banana	cytosol, nucleus, plastid	22.0	45.83
VIT_14s0219g00150.t01	Wine grape	mitochondrion	90.0	44.89
CDY37805	Canola	mitochondrion	68.0	44.44
CDY33981	Canola	mitochondrion	67.5	44.12
CDX67469	Canola	mitochondrion	18.5	32.46

Protein Annotations

KEGG:00020+1.3.5.1	KEGG:00190+1.3.5.1	KEGG:00650+1.3.5.1	KEGG:00720+1.3.5.1	Gene3D:1.10.1060.10	MapMan:2.3.6.1.2
InterPro:2Fe-2S_ferredoxin-like_sf	InterPro:2Fe-2S_ferredoxin-type	InterPro:2Fe2S_fd_BS	Gene3D:3.10.20.30	InterPro:4Fe4S_Fe-S-bd	InterPro:4Fe4S_Fe_S_CS
GO:A0A078IG44	UniProt:A0A078IG44	InterPro:Beta-grasp_dom_sf	EnsemblPlants:CDY48359	ProteinID:CDY48359	ProteinID:CDY48359.1
GO:GO:0003674	GO:GO:0003824	GO:GO:0005488	GO:GO:0005575	GO:GO:0005622	GO:GO:0005623
GO:GO:0005737	GO:GO:0005739	GO:GO:0005743	GO:GO:0006091	GO:GO:0006099	GO:GO:0008150
GO:GO:0008152	GO:GO:0008177	GO:GO:0009055	GO:GO:0009987	GO:GO:0016020	GO:GO:0016491
GO:GO:0022900	GO:GO:0046872	GO:GO:0051536	GO:GO:0051537	GO:GO:0051538	GO:GO:0051539
GO:GO:0055114	EnsemblPlantsGene:GSBRNA2T00089345001	InterPro:Helical_ferredxn	InterPro:IPR001041	InterPro:IPR009051	InterPro:IPR012675
InterPro:IPR017896	PFAM:PF13085	PFAM:PF13534	ScanProsite:PS00197	ScanProsite:PS00198	PFscan:PS51085
PFscan:PS51379	PANTHER:PTHR11921	PANTHER:PTHR11921:SF29	MetaCyc:PWY-3781	MetaCyc:PWY-4302	MetaCyc:PWY-561
MetaCyc:PWY-5690	MetaCyc:PWY-6728	MetaCyc:PWY-6969	MetaCyc:PWY-7254	MetaCyc:PWY-7279	SUPFAM:SSF46548
SUPFAM:SSF54292	InterPro:Succ_DH/fum_Rdtase_Fe-S	InterPro:Succ_DH/fum_Rdtase_N	TIGRFAMs:TIGR00384	UniParc:UPI0004EEB6B9	:

Description

BnaCnng16210DSuccinate dehydrogenase [ubiquinone] iron-sulfur subunit, mitochondrial [Source:UniProtKB/TrEMBL;Acc:A0A078IG44]

Coordinates

chrLK032767:-:127173..128765

Molecular Weight (calculated)

22745.5 Da

IEP (calculated)

7.954

GRAVY (calculated)

-0.409

Length

200 amino acids

Sequence
(BLAST)

001: MVLDALIKIK NEMDPSLTFR RSCREGICGS CAMNIDGCNG LACLTKIEEG SKETTITPLP HMFVIKDLVV DMTNFYNQYK SIEPWLKRKS PASEPGKEIL
101: QSKKDRAKLD GMYECILCAC CSTSCPSYWW NPESYLGPAA LLHANRWISD SRDEYTKERL EAIDDEFKLY RCHTILNCAR ACPKGLNPGK QIAHIKQLQR

Best Arabidopsis Sequence Match ( AT5G40650.1 )
(BLAST)

001: MAFGLIGRVV GTKSSRLSTA ARLIPARWTS TGSEAQSKAS TGGGGASLKT FQIYRWNPDN PGKPELQDYK IDLKDCGPMV LDALIKIKNE MDPSLTFRRS
101: CREGICGSCA MNIDGCNGLA CLTKIESGSK ETTITPLPHM FVIKDLVVDM TNFYNQYKSI EPWLKRKNPA SVPGKEILQS KKDRAKLDGM YECILCACCS
201: TSCPSYWWNP ESYLGPAALL HANRWISDSR DEYTKERLEA IDDEFKLYRC HTILNCARAC PKGLNPGKQI THIKQLQKSG

Arabidopsis Description

SDH2-2Succinate dehydrogenase [ubiquinone] iron-sulfur subunit 2, mitochondrial [Source:UniProtKB/Swiss-Prot;Acc:Q8LB02]
SUBAcon: [mitochondrion]

Hydropathy Plot

About CropPAL

The Protein Annotated Locations Database (CropPAL) houses large scale proteomic and GFP localization data from published experimental studies in Soybean (Glycine max), Maize (Zea mays), Wheat (Triticum aestivum), Barley (Hordeum vulgare), Rice (Oryza sativa), Field mustard (Brassica rapa), Canola (Brassica napus), Sorghum (Sorghum bicolor), Potato (Solanum tuberosum), Tomato (Solanum lycopersicum), Banana (Musa acuminata) and Wine grape (Vitis vinifera) as well as precomputed predictions for protein subcellular localizations using protein sequences.