CropPAL

Subcellular Localization

min:

: max

Winner_takes_all: mitochondrion

Predictor Summary:

plastid 2
mitochondrion 7

Predictors

GFP

MS/MS

Papers

PPI

No PPI Data

Homology

Paralog

locus	Identity	Homology Identity

Ortholog

locus	Homology Species	Location	Identity	Homology Identity
CDY48359	Canola	cytosol	70.61	98.5
CDY20051	Canola	cytosol	70.61	98.5
Bra025272.1-P	Field mustard	mitochondrion	98.21	97.51
CDY13709	Canola	mitochondrion	97.49	96.8
CDX67470	Canola	cytosol, endoplasmic reticulum, extracellular, golgi, mitochondrion, plasma membrane, plastid, vacuole	30.82	96.63
CDY34152	Canola	mitochondrion	93.55	92.88
CDY00158	Canola	cytosol	60.22	82.76
KRH07075	Soybean	cytosol	69.18	82.48
KRG94380	Soybean	mitochondrion	77.78	78.34
CDX67469	Canola	mitochondrion	28.32	69.3
CDY06159	Canola	cytosol	27.96	58.21
VIT_14s0219g00150.t01	Wine grape	mitochondrion	78.14	54.36
CDY37805	Canola	mitochondrion	55.91	50.98
CDY33981	Canola	mitochondrion	55.56	50.65
CDY11704	Canola	cytosol	11.47	49.23
GSMUA_Achr10P...	Banana	cytosol, nucleus, plastid	16.49	47.92
CDY11705	Canola	plastid	17.56	47.12

Protein Annotations

KEGG:00020+1.3.5.1	KEGG:00190+1.3.5.1	KEGG:00650+1.3.5.1	KEGG:00720+1.3.5.1	Gene3D:1.10.1060.10	MapMan:2.3.6.1.2
InterPro:2Fe-2S_ferredoxin-like_sf	InterPro:2Fe-2S_ferredoxin-type	InterPro:2Fe2S_fd_BS	Gene3D:3.10.20.30	InterPro:4Fe4S_Fe-S-bd	InterPro:4Fe4S_Fe_S_CS
GO:A0A078D8N3	InterPro:Beta-grasp_dom_sf	EnsemblPlants:CDX83688	ProteinID:CDX83688	ProteinID:CDX83688.1	GO:GO:0003674
GO:GO:0003824	GO:GO:0005488	GO:GO:0005575	GO:GO:0005622	GO:GO:0005623	GO:GO:0005737
GO:GO:0005739	GO:GO:0005743	GO:GO:0006091	GO:GO:0006099	GO:GO:0008150	GO:GO:0008152
GO:GO:0008177	GO:GO:0009055	GO:GO:0009987	GO:GO:0016020	GO:GO:0016491	GO:GO:0022900
GO:GO:0046872	GO:GO:0051536	GO:GO:0051537	GO:GO:0051538	GO:GO:0051539	GO:GO:0055114
EnsemblPlantsGene:GSBRNA2T00139393001	InterPro:Helical_ferredxn	InterPro:IPR001041	InterPro:IPR009051	InterPro:IPR012675	InterPro:IPR017896
PFAM:PF13085	PFAM:PF13534	ScanProsite:PS00197	ScanProsite:PS00198	PFscan:PS51085	PFscan:PS51379
PANTHER:PTHR11921	PANTHER:PTHR11921:SF29	MetaCyc:PWY-3781	MetaCyc:PWY-4302	MetaCyc:PWY-561	MetaCyc:PWY-5690
MetaCyc:PWY-6728	MetaCyc:PWY-6969	MetaCyc:PWY-7254	MetaCyc:PWY-7279	SUPFAM:SSF46548	SUPFAM:SSF54292
InterPro:Succ_DH/fum_Rdtase_Fe-S	InterPro:Succ_DH/fum_Rdtase_N	TIGRFAMs:TIGR00384	UniParc:UPI0004EB27F8	:	:

Description

BnaC07g24280D

Coordinates

chrLK031833:-:1614055..1615189

Molecular Weight (calculated)

31428.9 Da

IEP (calculated)

8.575

GRAVY (calculated)

-0.518

Length

279 amino acids

Sequence
(BLAST)

001: MSSGLIGRLV RTKPSRLTTA ARLIPSRCTA SVTEPEPKAS SGGGKPSNFK TFQIYRWNPD NPSKPELQDY KIDLKDCGPM VLDALIKIKN EMDPSLTFRR
101: SCREGICGSC AMNIDGCNGL ACLTKIEEGA KETTITPLPH MFVIKDLVVD MTNFYNQYKS IEPWLKRKNP PSEPGKEILQ SKKDRAKLDG MYECILCACC
201: STSCPSYWWN PESYLGPAAL LHANRWISDS RDEYTKERLE AIDDEFKLYR CHTILNCARA CPKGLNPGKQ IAHIKQLQR

Best Arabidopsis Sequence Match ( AT3G27380.2 )
(BLAST)

001: MASGLIGRLV GTKPSKLATA ARLIPARWTS TGAEAETKAS SGGGRGSNLK TFQIYRWNPD NPGKPELQNY QIDLKDCGPM VLDALIKIKN EMDPSLTFRR
101: SCREGICGSC AMNIDGCNGL ACLTKIQDEA SETTITPLPH MFVIKDLVVD MTNFYNQYKS IEPWLKRKTP ASVPAKEILQ SKKDRAKLDG MYECILCACC
201: STSCPSYWWN PESYLGPAAL LHANRWISDS RDEYTKERLE AIDDEFKLYR CHTILNCARA CPKGLNPGKQ ITHIKQLQR

Arabidopsis Description

SDH2-1Succinate dehydrogenase [ubiquinone] iron-sulfur subunit 1, mitochondrial [Source:UniProtKB/Swiss-Prot;Acc:Q8LBZ7]
SUBAcon: [mitochondrion]

Hydropathy Plot

About CropPAL

The Protein Annotated Locations Database (CropPAL) houses large scale proteomic and GFP localization data from published experimental studies in Soybean (Glycine max), Maize (Zea mays), Wheat (Triticum aestivum), Barley (Hordeum vulgare), Rice (Oryza sativa), Field mustard (Brassica rapa), Canola (Brassica napus), Sorghum (Sorghum bicolor), Potato (Solanum tuberosum), Tomato (Solanum lycopersicum), Banana (Musa acuminata) and Wine grape (Vitis vinifera) as well as precomputed predictions for protein subcellular localizations using protein sequences.