CropPAL

Subcellular Localization

min:

: max

Winner_takes_all: cytosol

Predictor Summary:

nucleus 2
cytosol 2
mitochondrion 1

Predictors

GFP

MS/MS

Papers

Winner Takes All:	cytosol
Any Predictor:	cytosol, nucleus
BaCelLo:	nucleus
MultiLoc:	cytosol
PProwler:	mitochondrion
WoLF PSORT:	nucleus
YLoc:	cytosol

PPI

No PPI Data

Homology

Paralog

locus	Identity	Homology Identity

Ortholog

locus	Homology Species	Location	Identity	Homology Identity
CDX67470	Canola	cytosol, endoplasmic reticulum, extracellular, golgi, mitochondrion, plasma membrane, plastid, vacuole	44.03	66.29
Bra031877.1-P	Field mustard	mitochondrion	97.76	42.81
CDY37805	Canola	mitochondrion	97.76	42.81
CDY33981	Canola	mitochondrion	97.76	42.81
CDY48359	Canola	cytosol	57.46	38.5
CDY20051	Canola	cytosol	57.46	38.5
AT5G65165.1	Thale cress	mitochondrion	87.31	37.86
CDY11705	Canola	plastid	25.37	32.69
Solyc04g055020.1.1	Tomato	mitochondrion	75.37	32.69
CDY00158	Canola	cytosol	48.51	32.02
VIT_00s0304g00040.t01	Wine grape	mitochondrion	67.16	31.8
Solyc04g055030.1.1	Tomato	mitochondrion	70.15	31.44
PGSC0003DMT400086943	Potato	mitochondrion	69.4	31.1
Zm00001d005663_P001	Maize	mitochondrion	64.18	28.01
CDX83688	Canola	mitochondrion	58.21	27.96
OQU89416	Sorghum	mitochondrion	63.43	27.42
CDY34152	Canola	mitochondrion	57.46	27.4
CDY13709	Canola	mitochondrion	57.46	27.4
TraesCS5A01G189800.1	Wheat	mitochondrion	60.45	26.64
TraesCS5D01G201100.1	Wheat	mitochondrion	60.45	26.64
HORVU5Hr1G058190.1	Barley	mitochondrion	60.45	26.38
Os09t0370300-01	Rice	mitochondrion	60.45	26.05
TraesCS5B01G193400.1	Wheat	mitochondrion	55.97	24.19
PGSC0003DMT400053128	Potato	mitochondrion	46.27	24.03
CDY11704	Canola	cytosol	2.99	6.15
CDX67469	Canola	mitochondrion	0.0	0.0

Protein Annotations

KEGG:00020+1.3.5.1	KEGG:00190+1.3.5.1	KEGG:00650+1.3.5.1	KEGG:00720+1.3.5.1	Gene3D:1.10.1060.10	MapMan:2.3.6.1.2
InterPro:4Fe4S_Fe-S-bd	InterPro:4Fe4S_Fe_S_CS	GO:A0A078EZZ8	EnsemblPlants:CDY06159	ProteinID:CDY06159	ProteinID:CDY06159.1
GO:GO:0003674	GO:GO:0003824	GO:GO:0005488	GO:GO:0006091	GO:GO:0006099	GO:GO:0008150
GO:GO:0008152	GO:GO:0009987	GO:GO:0016491	GO:GO:0051536	GO:GO:0055114	EnsemblPlantsGene:GSBRNA2T00122050001
InterPro:Helical_ferredxn	InterPro:IPR009051	InterPro:IPR017896	PFAM:PF13534	ScanProsite:PS00198	PFscan:PS51379
PANTHER:PTHR11921	PANTHER:PTHR11921:SF23	MetaCyc:PWY-3781	MetaCyc:PWY-4302	MetaCyc:PWY-561	MetaCyc:PWY-5690
MetaCyc:PWY-6728	MetaCyc:PWY-6969	MetaCyc:PWY-7254	MetaCyc:PWY-7279	SUPFAM:SSF46548	InterPro:Succ_DH/fum_Rdtase_Fe-S
TIGRFAMs:TIGR00384	UniParc:UPI0004EE75F5	:	:	:	:

Description

BnaA09g50440D

Coordinates

chrLK031968:+:57372..57892

Molecular Weight (calculated)

15554.7 Da

IEP (calculated)

8.945

GRAVY (calculated)

-0.791

Length

134 amino acids

Sequence
(BLAST)

001: MFRSVEPWLK TRKPPKDGRE HLQSPNDRKK LDGLYECILC ACCTTSCPSY WWNPEEFPGP AALLQAYRWI SDSRDEFREE RLQAITEDER KVYRCRAIKN
101: CTATCPKGLN PASAILKMKA KHSLPDPVKR IERA

Best Arabidopsis Sequence Match ( AT3G27380.1 )
(BLAST)

001: MASGLIGRLV GTKPSKLATA ARLIPARWTS TGAEAETKAS SGGGRGSNLK TFQIYRWNPD NPGKPELQNY QIDLKDCGPM VLDALIKIKN EMDPSLTFRR
101: SCREGICGSC AMNIDGCNGL ACLTKIQDEA SETTITPLPH MFVIKDLVVD MTNFYNQYKS IEPWLKRKTP ASVPAKEILQ SKKDRAKLDG MYECILCACC
201: STSCPSYWWN PESYLGPAAL LHANRWISDS RDEYTKERLE AIDDEFKLYR CHTILNCARA CPKGLNPGKQ ITHIKQLQR

Arabidopsis Description

SDH2-1Succinate dehydrogenase [ubiquinone] iron-sulfur subunit 1, mitochondrial [Source:UniProtKB/Swiss-Prot;Acc:Q8LBZ7]
SUBAcon: [mitochondrion]

Hydropathy Plot

About CropPAL

The Protein Annotated Locations Database (CropPAL) houses large scale proteomic and GFP localization data from published experimental studies in Soybean (Glycine max), Maize (Zea mays), Wheat (Triticum aestivum), Barley (Hordeum vulgare), Rice (Oryza sativa), Field mustard (Brassica rapa), Canola (Brassica napus), Sorghum (Sorghum bicolor), Potato (Solanum tuberosum), Tomato (Solanum lycopersicum), Banana (Musa acuminata) and Wine grape (Vitis vinifera) as well as precomputed predictions for protein subcellular localizations using protein sequences.