Factsheet for Solyc04g055020.1.1

Subcellular Localization

min:

: max

Winner_takes_all: mitochondrion

Predictor Summary:

nucleus 2
mitochondrion 6
cytosol 2

Predictors

GFP

MS/MS

Papers

PPI

No PPI Data

Homology

Paralog

locus	Identity	Homology Identity

Ortholog

locus	Homology Species	Location	Identity	Homology Identity
PGSC0003DMT400053128	Potato	mitochondrion	69.58	83.33
CDY06159	Canola	cytosol	32.69	75.37
Solyc04g055030.1.1	Tomato	mitochondrion	72.82	75.25
Bra031877.1-P	Field mustard	mitochondrion	67.96	68.63
CDY37805	Canola	mitochondrion	67.96	68.63
CDY33981	Canola	mitochondrion	67.96	68.63
AT5G65165.1	Thale cress	mitochondrion	67.96	67.96
VIT_00s0304g00040.t01	Wine grape	mitochondrion	61.49	67.14
TraesCS5D01G201100.1	Wheat	mitochondrion	60.52	61.51
TraesCS5A01G189800.1	Wheat	mitochondrion	59.87	60.86
HORVU5Hr1G058190.1	Barley	mitochondrion	59.55	59.93
TraesCS5B01G193400.1	Wheat	mitochondrion	58.9	58.71
Os09t0370300-01	Rice	mitochondrion	57.61	57.23
Zm00001d005663_P001	Maize	mitochondrion	56.63	57.0
OQU89416	Sorghum	mitochondrion	56.31	56.13
Solyc02g093680.2.1	Tomato	extracellular, mitochondrion, plastid	48.87	55.11
Solyc02g092730.2.1	Tomato	cytosol, nucleus	41.75	50.79

Protein Annotations

KEGG:00020+1.3.5.1	KEGG:00190+1.3.5.1	KEGG:00650+1.3.5.1	KEGG:00720+1.3.5.1	Gene3D:1.10.1060.10	MapMan:2.3.6.1.2
InterPro:2Fe-2S_ferredoxin-like_sf	InterPro:2Fe2S_fd_BS	Gene3D:3.10.20.30	InterPro:4Fe4S_Fe-S-bd	InterPro:4Fe4S_Fe_S_CS	InterPro:Beta-grasp_dom_sf
GO:GO:0003674	GO:GO:0003824	GO:GO:0005488	GO:GO:0005575	GO:GO:0005622	GO:GO:0005623
GO:GO:0005737	GO:GO:0005739	GO:GO:0006091	GO:GO:0006099	GO:GO:0008150	GO:GO:0008152
GO:GO:0009055	GO:GO:0009060	GO:GO:0009987	GO:GO:0016491	GO:GO:0022904	GO:GO:0051536
GO:GO:0051537	GO:GO:0055114	InterPro:Helical_ferredxn	InterPro:IPR009051	InterPro:IPR012675	InterPro:IPR017896
UniProt:K4BSQ0	PFAM:PF13085	PFAM:PF13534	ScanProsite:PS00197	ScanProsite:PS00198	PFscan:PS51379
PANTHER:PTHR11921	PANTHER:PTHR11921:SF23	SUPFAM:SSF46548	SUPFAM:SSF54292	EnsemblPlantsGene:Solyc04g055020.1	EnsemblPlants:Solyc04g055020.1.1
InterPro:Succ_DH/fum_Rdtase_Fe-S	InterPro:Succ_DH/fum_Rdtase_N	TIGRFAMs:TIGR00384	UniParc:UPI0002765A53	SEG:seg	:

Description

No Description!

Coordinates

chr4:-:53543552..53546122

Molecular Weight (calculated)

35717.1 Da

IEP (calculated)

8.836

GRAVY (calculated)

-0.640

Length

309 amino acids

Sequence
(BLAST)

001: MSRNLILKEV VKKLRHLRKR EYSRFPILEG HPIAQQHGKE AVESVEILKK LSDKDKKMKE FRIYRWNPHK PNQKPFLQSF FVHLPSCGPM VLDALQKIKG
101: EEDSSLSYRR SCREGICGSC SMNINGVNTV ACLKPIDTDT SKPTTITPLP HMFVIKDLVV DLTNFYQQYK SVEPWLKTRK PPPDGREYRQ TPEDRKKLDG
201: LYECILCACC TTSCPSYWWN PEEFLGPAAL LHAYRWISDS RDEFANERLQ AITEDQGRLY RCRTIKNCTA CCPKSLNPAN AINKMKTIHL TEKPIQDLEA
301: EPEPRFGQA

Best Arabidopsis Sequence Match ( AT5G65165.1 )
(BLAST)

001: MSSVLRLLGR RICNPAAEKV RLSSSLSGGG DFPILNGHKA AQDLSKDTLK SQDITKEKEG QHKEVKKEFK IYRWNPDKPN SKPFLQSFFV DLSSCGPMVL
101: DVLQKIKAED DASLSYRRSC REGICGSCSM NIDGTNTVAC LKPINPNTSK PTIITPLPHM YVIKDLVVDL TNFYQQYKSM EPWLKTRKPP KDGREHRQSP
201: KDRKKLDGLY ECILCACCTT SCPSYWWNPE EFPGPAALLQ AYRWISDSRD EYREERLQAI TESETKVYRC RAIKNCTATC PKGLNPASAI LKMKSKHLLS
301: DPLVRTESV

Arabidopsis Description

SDH2-3Succinate dehydrogenase [ubiquinone] iron-sulfur subunit 3, mitochondrial [Source:UniProtKB/Swiss-Prot;Acc:Q9FJP9]
SUBAcon: [mitochondrion]

Hydropathy Plot

About CropPAL

The Protein Annotated Locations Database (CropPAL) houses large scale proteomic and GFP localization data from published experimental studies in Soybean (Glycine max), Maize (Zea mays), Wheat (Triticum aestivum), Barley (Hordeum vulgare), Rice (Oryza sativa), Field mustard (Brassica rapa), Canola (Brassica napus), Sorghum (Sorghum bicolor), Potato (Solanum tuberosum), Tomato (Solanum lycopersicum), Banana (Musa acuminata) and Wine grape (Vitis vinifera) as well as precomputed predictions for protein subcellular localizations using protein sequences.