Factsheet for Bra031877.1-P

Subcellular Localization

min:

: max

Winner_takes_all: mitochondrion

Predictor Summary:

plastid 1
mitochondrion 8
cytosol 1
nucleus 1

Predictors

GFP

MS/MS

Papers

PPI

No PPI Data

Homology

Paralog

locus	Identity	Homology Identity

Ortholog

locus	Homology Species	Location	Identity	Homology Identity
CDY37805	Canola	mitochondrion	100.0	100.0
CDY06159	Canola	cytosol	42.81	97.76
AT5G65165.1	Thale cress	mitochondrion	88.56	87.7
Solyc04g055020.1.1	Tomato	mitochondrion	68.63	67.96
Bra028469.1-P	Field mustard	cytosol	44.44	67.66
PGSC0003DMT400053128	Potato	mitochondrion	54.9	65.12
VIT_00s0304g00040.t01	Wine grape	mitochondrion	59.8	64.66
Solyc04g055030.1.1	Tomato	mitochondrion	60.78	62.21
TraesCS5D01G201100.1	Wheat	mitochondrion	59.8	60.2
TraesCS5A01G189800.1	Wheat	mitochondrion	59.48	59.87
HORVU5Hr1G058190.1	Barley	mitochondrion	59.15	58.96
Zm00001d005663_P001	Maize	mitochondrion	58.17	57.98
PGSC0003DMT400086943	Potato	mitochondrion	55.88	57.19
TraesCS5B01G193400.1	Wheat	mitochondrion	57.84	57.1
Os09t0370300-01	Rice	mitochondrion	57.19	56.27
OQU89416	Sorghum	mitochondrion	56.86	56.13
Bra039082.1-P	Field mustard	mitochondrion	40.85	55.56
Bra025272.1-P	Field mustard	mitochondrion	50.65	55.16
Bra033006.1-P	Field mustard	mitochondrion	50.0	54.45

Protein Annotations

KEGG:00020+1.3.5.1	KEGG:00190+1.3.5.1	KEGG:00650+1.3.5.1	KEGG:00720+1.3.5.1	Gene3D:1.10.1060.10	MapMan:2.3.6.1.2
InterPro:2Fe-2S_ferredoxin-like_sf	InterPro:2Fe-2S_ferredoxin-type	InterPro:2Fe2S_fd_BS	Gene3D:3.10.20.30	InterPro:4Fe4S_Fe-S-bd	InterPro:4Fe4S_Fe_S_CS
InterPro:Beta-grasp_dom_sf	EnsemblPlantsGene:Bra031877	EnsemblPlants:Bra031877.1	EnsemblPlants:Bra031877.1-P	GO:GO:0003674	GO:GO:0003824
GO:GO:0005488	GO:GO:0005575	GO:GO:0005622	GO:GO:0005623	GO:GO:0005737	GO:GO:0005739
GO:GO:0005743	GO:GO:0006091	GO:GO:0006099	GO:GO:0008150	GO:GO:0008152	GO:GO:0008177
GO:GO:0009055	GO:GO:0009987	GO:GO:0016020	GO:GO:0016491	GO:GO:0022900	GO:GO:0045273
GO:GO:0046872	GO:GO:0051536	GO:GO:0051537	GO:GO:0051538	GO:GO:0051539	GO:GO:0055114
InterPro:Helical_ferredxn	InterPro:IPR001041	InterPro:IPR009051	InterPro:IPR012675	InterPro:IPR017896	UniProt:M4ESU7
PFAM:PF13085	PFAM:PF13534	ScanProsite:PS00197	ScanProsite:PS00198	PFscan:PS51085	PFscan:PS51379
PANTHER:PTHR11921	PANTHER:PTHR11921:SF23	SUPFAM:SSF46548	SUPFAM:SSF54292	InterPro:Succ_DH/fum_Rdtase_Fe-S	InterPro:Succ_DH/fum_Rdtase_N
TIGRFAMs:TIGR00384	UniParc:UPI00025468FD	:	:	:	:

Description

AT5G65165 (E=6e-164) SDH2-3 | SDH2-3; electron carrier/ succinate dehydrogenase

Coordinates

chrA02:-:27347840..27349326

Molecular Weight (calculated)

34882.0 Da

IEP (calculated)

9.173

GRAVY (calculated)

-0.621

Length

306 amino acids

Sequence
(BLAST)

001: MLRLLQRRIC SQAAEKVRLS SSLSGNGDFP ILKGHKAAQD LSKDTLKSHE TIKDKEGQHK VAKKEFKIYR WNPDKPNTKP FLQSFFVDVS TCGPMVLDVL
101: QKIKAEEDPS LSYRRSCREG ICGSCSMNID GTNTVACLKP INSDTSKPTI ITPLPHMYVI KDLVIDLTNF YQQYKSVEPW LKTRKPPKDG REHLQSPNDR
201: KKLDGLYECI LCACCTTSCP SYWWNPEEFP GPAALLQAYR WISDSRDEFR EERLQAITED ERKVYRCRAI KNCTATCPKG LNPASAILKM KAKHSLPDPV
301: KRIERA

Best Arabidopsis Sequence Match ( AT5G65165.1 )
(BLAST)

001: MSSVLRLLGR RICNPAAEKV RLSSSLSGGG DFPILNGHKA AQDLSKDTLK SQDITKEKEG QHKEVKKEFK IYRWNPDKPN SKPFLQSFFV DLSSCGPMVL
101: DVLQKIKAED DASLSYRRSC REGICGSCSM NIDGTNTVAC LKPINPNTSK PTIITPLPHM YVIKDLVVDL TNFYQQYKSM EPWLKTRKPP KDGREHRQSP
201: KDRKKLDGLY ECILCACCTT SCPSYWWNPE EFPGPAALLQ AYRWISDSRD EYREERLQAI TESETKVYRC RAIKNCTATC PKGLNPASAI LKMKSKHLLS
301: DPLVRTESV

Arabidopsis Description

SDH2-3Succinate dehydrogenase [ubiquinone] iron-sulfur subunit 3, mitochondrial [Source:UniProtKB/Swiss-Prot;Acc:Q9FJP9]
SUBAcon: [mitochondrion]

Hydropathy Plot

About CropPAL

The Protein Annotated Locations Database (CropPAL) houses large scale proteomic and GFP localization data from published experimental studies in Soybean (Glycine max), Maize (Zea mays), Wheat (Triticum aestivum), Barley (Hordeum vulgare), Rice (Oryza sativa), Field mustard (Brassica rapa), Canola (Brassica napus), Sorghum (Sorghum bicolor), Potato (Solanum tuberosum), Tomato (Solanum lycopersicum), Banana (Musa acuminata) and Wine grape (Vitis vinifera) as well as precomputed predictions for protein subcellular localizations using protein sequences.