Factsheet for TraesCS5B01G193400.1

Subcellular Localization

min:

: max

Winner_takes_all: mitochondrion

Predictor Summary:

mitochondrion 6

Predictors

GFP

MS/MS

Papers

Winner Takes All:	mitochondrion
Any Predictor:	mitochondrion
MultiLoc:	mitochondrion
Predotar:	mitochondrion
PProwler:	mitochondrion
TargetP:	mitochondrion
WoLF PSORT:	mitochondrion
YLoc:	mitochondrion

PPI

No PPI Data

Homology

Paralog

locus	Identity	Homology Identity

Ortholog

locus	Homology Species	Location	Identity	Homology Identity
TraesCS5D01G201100.1	Wheat	mitochondrion	91.29	93.09
TraesCS5A01G189800.1	Wheat	mitochondrion	90.0	91.78
HORVU5Hr1G058190.1	Barley	mitochondrion	89.03	89.9
Zm00001d005663_P001	Maize	mitochondrion	68.39	69.06
OQU89416	Sorghum	mitochondrion	68.39	68.39
Os09t0370300-01	Rice	mitochondrion	67.1	66.88
PGSC0003DMT400053128	Potato	mitochondrion	50.65	60.85
Solyc04g055020.1.1	Tomato	mitochondrion	58.71	58.9
CDY37805	Canola	mitochondrion	57.1	57.84
Bra031877.1-P	Field mustard	mitochondrion	57.1	57.84
CDY33981	Canola	mitochondrion	56.77	57.52
AT5G65165.1	Thale cress	mitochondrion	57.1	57.28
VIT_00s0304g00040.t01	Wine grape	mitochondrion	52.26	57.24
CDY06159	Canola	cytosol	24.19	55.97
Solyc04g055030.1.1	Tomato	mitochondrion	52.58	54.52
PGSC0003DMT400086943	Potato	mitochondrion	48.71	50.5
TraesCS7B01G214900.1	Wheat	mitochondrion	43.23	36.61

Protein Annotations

KEGG:00020+1.3.5.1	KEGG:00190+1.3.5.1	KEGG:00650+1.3.5.1	KEGG:00720+1.3.5.1	Gene3D:1.10.1060.10	MapMan:2.3.6.1.2
InterPro:2Fe-2S_ferredoxin-like_sf	InterPro:2Fe2S_fd_BS	Gene3D:3.10.20.30	InterPro:4Fe4S_Fe-S-bd	InterPro:4Fe4S_Fe_S_CS	InterPro:Beta-grasp_dom_sf
GO:GO:0003674	GO:GO:0003824	GO:GO:0005488	GO:GO:0005575	GO:GO:0005622	GO:GO:0005623
GO:GO:0005737	GO:GO:0005739	GO:GO:0006091	GO:GO:0006099	GO:GO:0008150	GO:GO:0008152
GO:GO:0009055	GO:GO:0009987	GO:GO:0016020	GO:GO:0016491	GO:GO:0045273	GO:GO:0051536
GO:GO:0051537	GO:GO:0055114	InterPro:Helical_ferredxn	InterPro:IPR009051	InterPro:IPR012675	InterPro:IPR017896
PFAM:PF13085	PFAM:PF13534	ScanProsite:PS00197	ScanProsite:PS00198	PFscan:PS51379	PANTHER:PTHR11921
PANTHER:PTHR11921:SF23	SUPFAM:SSF46548	SUPFAM:SSF54292	InterPro:Succ_DH/fum_Rdtase_Fe-S	InterPro:Succ_DH/fum_Rdtase_N	TIGRFAMs:TIGR00384
EnsemblPlantsGene:TraesCS5B01G193400	EnsemblPlants:TraesCS5B01G193400.1	SEG:seg	:	:	:

Description

No Description!

Coordinates

chr5B:-:349378493..349379716

Molecular Weight (calculated)

34082.0 Da

IEP (calculated)

8.855

GRAVY (calculated)

-0.385

Length

310 amino acids

Sequence
(BLAST)

001: MLGRTLPRLA SVKDRVAGAA KSAVKGDEHF PALKGHPAAR VHAREAAEKQ AGLAAAEEEK KRGGKAATLK EFQIYRWNPD AHGRPFLQSY FVDLGTCGPM
101: VLDVLQKIKS EHDSTLAFRR SCREGICGSC SMNIDGVNTV ACLKPIDTDT STATMITPLP HMYVVKDLVV DLTNFYQQYK SIEPWLKTKR PAPEGREHAQ
201: SPGERRKLDG LYECILCACC STACPSYWWN SEDFLGPAAL LHAYRWVSDS DSWCNDNLKP RRLRGAADPG AVGGMGRCRM IKSCTATCPK SLDPATAISA
301: LKTMHQLRKA

Best Arabidopsis Sequence Match ( AT5G65165.1 )
(BLAST)

001: MSSVLRLLGR RICNPAAEKV RLSSSLSGGG DFPILNGHKA AQDLSKDTLK SQDITKEKEG QHKEVKKEFK IYRWNPDKPN SKPFLQSFFV DLSSCGPMVL
101: DVLQKIKAED DASLSYRRSC REGICGSCSM NIDGTNTVAC LKPINPNTSK PTIITPLPHM YVIKDLVVDL TNFYQQYKSM EPWLKTRKPP KDGREHRQSP
201: KDRKKLDGLY ECILCACCTT SCPSYWWNPE EFPGPAALLQ AYRWISDSRD EYREERLQAI TESETKVYRC RAIKNCTATC PKGLNPASAI LKMKSKHLLS
301: DPLVRTESV

Arabidopsis Description

SDH2-3Succinate dehydrogenase [ubiquinone] iron-sulfur subunit 3, mitochondrial [Source:UniProtKB/Swiss-Prot;Acc:Q9FJP9]
SUBAcon: [mitochondrion]

Hydropathy Plot

About CropPAL

The Protein Annotated Locations Database (CropPAL) houses large scale proteomic and GFP localization data from published experimental studies in Soybean (Glycine max), Maize (Zea mays), Wheat (Triticum aestivum), Barley (Hordeum vulgare), Rice (Oryza sativa), Field mustard (Brassica rapa), Canola (Brassica napus), Sorghum (Sorghum bicolor), Potato (Solanum tuberosum), Tomato (Solanum lycopersicum), Banana (Musa acuminata) and Wine grape (Vitis vinifera) as well as precomputed predictions for protein subcellular localizations using protein sequences.