Factsheet for PGSC0003DMT400053128

Subcellular Localization

min:

: max

Winner_takes_all: mitochondrion

Predictor Summary:

plastid 1
mitochondrion 6
cytosol 1
nucleus 1

Predictors

GFP

MS/MS

Papers

PPI

No PPI Data

Homology

Paralog

locus	Identity	Homology Identity

Ortholog

locus	Homology Species	Location	Identity	Homology Identity
Solyc04g055020.1.1	Tomato	mitochondrion	83.33	69.58
PGSC0003DMT400064279	Potato	cytosol	29.84	68.14
AT5G65165.1	Thale cress	mitochondrion	66.28	55.34
Bra031877.1-P	Field mustard	mitochondrion	65.12	54.9
CDY37805	Canola	mitochondrion	65.12	54.9
VIT_00s0304g00040.t01	Wine grape	mitochondrion	60.08	54.77
CDY33981	Canola	mitochondrion	64.73	54.58
PGSC0003DMT400086943	Potato	mitochondrion	62.79	54.18
TraesCS5D01G201100.1	Wheat	mitochondrion	61.24	51.97
TraesCS5A01G189800.1	Wheat	mitochondrion	60.47	51.32
HORVU5Hr1G058190.1	Barley	mitochondrion	60.47	50.81
TraesCS5B01G193400.1	Wheat	mitochondrion	60.85	50.65
PGSC0003DMT400032862	Potato	mitochondrion	51.55	48.54
Zm00001d005663_P001	Maize	mitochondrion	56.59	47.56
OQU89416	Sorghum	mitochondrion	56.59	47.1
Os09t0370300-01	Rice	mitochondrion	55.81	46.3
CDY06159	Canola	cytosol	24.03	46.27

Protein Annotations

KEGG:00020+1.3.5.1	KEGG:00190+1.3.5.1	KEGG:00650+1.3.5.1	KEGG:00720+1.3.5.1	Gene3D:1.10.1060.10	MapMan:2.3.6.1.2
InterPro:2Fe-2S_ferredoxin-like_sf	InterPro:2Fe-2S_ferredoxin-type	InterPro:2Fe2S_fd_BS	Gene3D:3.10.20.30	InterPro:4Fe4S_Fe-S-bd	InterPro:4Fe4S_Fe_S_CS
InterPro:Beta-grasp_dom_sf	GO:GO:0003674	GO:GO:0003824	GO:GO:0005488	GO:GO:0005575	GO:GO:0005622
GO:GO:0005623	GO:GO:0005737	GO:GO:0005739	GO:GO:0005743	GO:GO:0006091	GO:GO:0006099
GO:GO:0008150	GO:GO:0008152	GO:GO:0008177	GO:GO:0009055	GO:GO:0009987	GO:GO:0016020
GO:GO:0016491	GO:GO:0022900	GO:GO:0046872	GO:GO:0051536	GO:GO:0051537	GO:GO:0051538
GO:GO:0051539	GO:GO:0055114	InterPro:Helical_ferredxn	InterPro:IPR001041	InterPro:IPR009051	InterPro:IPR012675
InterPro:IPR017896	UniProt:M1BUF6	PFAM:PF13085	EnsemblPlantsGene:PGSC0003DMG400020612	PGSC:PGSC0003DMG400020612	EnsemblPlants:PGSC0003DMT400053128
ScanProsite:PS00197	ScanProsite:PS00198	PFscan:PS51085	PFscan:PS51379	PANTHER:PTHR11921	PANTHER:PTHR11921:SF23
SUPFAM:SSF46548	SUPFAM:SSF54292	InterPro:Succ_DH/fum_Rdtase_Fe-S	InterPro:Succ_DH/fum_Rdtase_N	TIGRFAMs:TIGR00384	UniParc:UPI00029547C5
SEG:seg	:	:	:	:	:

Description

Succinate dehydrogenase [Source:PGSC_GENE;Acc:PGSC0003DMG400020612]

Coordinates

chr4:+:51317121..51326442

Molecular Weight (calculated)

29815.3 Da

IEP (calculated)

9.626

GRAVY (calculated)

-0.484

Length

258 amino acids

Sequence
(BLAST)

001: MSRNLIIKEG VKKLRHLRKE YSRFPILEGH PIAQQHGKEA VESVGILKKL SDKDKKMKEF RIYRWNPDKP NQKPFLQSFF VHLPSCGPMV LDALQKIKGE
101: EDSSLSYRRS CREGICGSCS MNINGVNTVA CLKPIDTDTS KLTTITPLPH MFVIKDLVVD LSNFYHQYKS IEPWLKTRKP PPDGREYRQT PLDRKKLDGL
201: YECILCACCS TSCPSYWWNP EEFLGPAALL HAYRWISDRL ILQNTSRINT KNMVISLR

Best Arabidopsis Sequence Match ( AT5G65165.1 )
(BLAST)

001: MSSVLRLLGR RICNPAAEKV RLSSSLSGGG DFPILNGHKA AQDLSKDTLK SQDITKEKEG QHKEVKKEFK IYRWNPDKPN SKPFLQSFFV DLSSCGPMVL
101: DVLQKIKAED DASLSYRRSC REGICGSCSM NIDGTNTVAC LKPINPNTSK PTIITPLPHM YVIKDLVVDL TNFYQQYKSM EPWLKTRKPP KDGREHRQSP
201: KDRKKLDGLY ECILCACCTT SCPSYWWNPE EFPGPAALLQ AYRWISDSRD EYREERLQAI TESETKVYRC RAIKNCTATC PKGLNPASAI LKMKSKHLLS
301: DPLVRTESV

Arabidopsis Description

SDH2-3Succinate dehydrogenase [ubiquinone] iron-sulfur subunit 3, mitochondrial [Source:UniProtKB/Swiss-Prot;Acc:Q9FJP9]
SUBAcon: [mitochondrion]

Hydropathy Plot

About CropPAL

The Protein Annotated Locations Database (CropPAL) houses large scale proteomic and GFP localization data from published experimental studies in Soybean (Glycine max), Maize (Zea mays), Wheat (Triticum aestivum), Barley (Hordeum vulgare), Rice (Oryza sativa), Field mustard (Brassica rapa), Canola (Brassica napus), Sorghum (Sorghum bicolor), Potato (Solanum tuberosum), Tomato (Solanum lycopersicum), Banana (Musa acuminata) and Wine grape (Vitis vinifera) as well as precomputed predictions for protein subcellular localizations using protein sequences.