Factsheet for PGSC0003DMT400064279

Subcellular Localization

min:

: max

Winner_takes_all: cytosol

Predictor Summary:

plastid 2
mitochondrion 3
cytosol 3

Predictors

GFP

MS/MS

Papers

PPI

No PPI Data

Homology

Paralog

locus	Identity	Homology Identity

Ortholog

locus	Homology Species	Location	Identity	Homology Identity
Bra028469.1-P	Field mustard	cytosol	91.15	51.24
GSMUA_Achr11P...	Banana	cytosol	84.96	47.76
Bra039082.1-P	Field mustard	mitochondrion	89.38	44.89
Zm00001d011333_P001	Maize	cytosol, golgi, mitochondrion	54.87	44.6
CDY11704	Canola	cytosol	24.78	43.08
Solyc02g092730.2.1	Tomato	cytosol, nucleus	95.58	42.52
PGSC0003DMT400032862	Potato	mitochondrion	98.23	40.51
AT3G27380.1	Thale cress	mitochondrion	90.27	36.56
AT5G40650.1	Thale cress	mitochondrion	90.27	36.43
Bra025272.1-P	Field mustard	mitochondrion	89.38	35.94
Bra033006.1-P	Field mustard	mitochondrion	87.61	35.23
KRH33590	Soybean	cytosol	53.1	34.88
GSMUA_Achr11P...	Banana	mitochondrion	85.84	34.28
Zm00001d045148_P001	Maize	mitochondrion	42.48	33.57
GSMUA_Achr7P02800_001	Banana	mitochondrion	61.06	33.5
HORVU5Hr1G057270.1	Barley	cytosol, mitochondrion, plastid	26.55	32.61
CDX67469	Canola	mitochondrion	31.86	31.58
PGSC0003DMT400053128	Potato	mitochondrion	68.14	29.84
Os08t0120000-05	Rice	mitochondrion	86.73	28.0
HORVU7Hr1G074890.6	Barley	mitochondrion	85.84	27.71
OQU79812	Sorghum	mitochondrion	85.84	27.56
TraesCS7A01G314000.1	Wheat	mitochondrion	84.96	26.23
TraesCS7B01G214900.1	Wheat	mitochondrion	84.96	26.23
TraesCS7D01G311200.1	Wheat	mitochondrion	84.96	26.23
VIT_14s0219g00150.t01	Wine grape	mitochondrion	91.15	25.69
PGSC0003DMT400086943	Potato	mitochondrion	67.26	25.42
Zm00001d035136_P001	Maize	mitochondrion	85.84	23.89
Zm00001d049649_P001	Maize	mitochondrion	83.19	23.1
GSMUA_Achr7P02810_001	Banana	extracellular, vacuole	9.73	7.24
Os09t0370200-01	Rice	mitochondrion	15.93	6.34
CDX67470	Canola	cytosol, endoplasmic reticulum, extracellular, golgi, mitochondrion, plasma membrane, plastid, vacuole	2.65	3.37
GSMUA_Achr11P...	Banana	cytosol, extracellular	2.65	3.12

Protein Annotations

KEGG:00020+1.3.5.1	KEGG:00190+1.3.5.1	KEGG:00650+1.3.5.1	KEGG:00720+1.3.5.1	Gene3D:1.10.1060.10	MapMan:2.3.6.1.2
InterPro:2Fe-2S_ferredoxin-like_sf	InterPro:2Fe-2S_ferredoxin-type	InterPro:2Fe2S_fd_BS	Gene3D:3.10.20.30	InterPro:Beta-grasp_dom_sf	GO:GO:0003674
GO:GO:0003824	GO:GO:0005488	GO:GO:0006091	GO:GO:0006099	GO:GO:0008150	GO:GO:0008152
GO:GO:0009055	GO:GO:0009987	GO:GO:0016491	GO:GO:0022900	GO:GO:0051536	GO:GO:0051537
GO:GO:0055114	InterPro:Helical_ferredxn	InterPro:IPR001041	InterPro:IPR009051	InterPro:IPR012675	UniProt:M1CC30
PFAM:PF13085	EnsemblPlantsGene:PGSC0003DMG400024973	PGSC:PGSC0003DMG400024973	EnsemblPlants:PGSC0003DMT400064279	ScanProsite:PS00197	PFscan:PS51085
PANTHER:PTHR11921	SUPFAM:SSF54292	InterPro:Succ_DH/fum_Rdtase_Fe-S	InterPro:Succ_DH/fum_Rdtase_N	TIGRFAMs:TIGR00384	UniParc:UPI000294BCB9

Description

Mitochondrial succinate dehydrogenase iron sulfur subunit [Source:PGSC_GENE;Acc:PGSC0003DMG400024973]

Coordinates

chr2:-:43129836..43132617

Molecular Weight (calculated)

12641.4 Da

IEP (calculated)

7.827

GRAVY (calculated)

-0.270

Length

113 amino acids

Sequence
(BLAST)

001: MVLDALIKIK NEIDPSLTFR RSCREGICGS CAMNIDGCNG LACLIKISSD SESTITPLPH MFVIKDLVVD MTNFYNQYKS IEPWLKRKTP APTPGKEIPQ
101: SKSDRAKLDG MYE

Best Arabidopsis Sequence Match ( AT5G40650.2 )
(BLAST)

001: MAFGLIGRVV GTKSSRLSTA ARLIPARWTS TGSEAQSKAS TGGGGASLKT FQIYRWNPDN PGKPELQDYK IDLKDCGPMV LDALIKIKNE MDPSLTFRRS
101: CREGICGSCA MNIDGCNGLA CLTKIESGSK ETTITPLPHM FVIKDLVVDM TNFYNQYKSI EPWLKRKNPA SVPGKEILQS KKDRAKLDGM YECILCACCS
201: TSCPSYWWNP ESYLGPAALL HANR

Arabidopsis Description

SDH2-2Succinate dehydrogenase [ubiquinone] iron-sulfur subunit 2, mitochondrial [Source:UniProtKB/Swiss-Prot;Acc:Q8LB02]
SUBAcon: [mitochondrion]

Hydropathy Plot

About CropPAL

The Protein Annotated Locations Database (CropPAL) houses large scale proteomic and GFP localization data from published experimental studies in Soybean (Glycine max), Maize (Zea mays), Wheat (Triticum aestivum), Barley (Hordeum vulgare), Rice (Oryza sativa), Field mustard (Brassica rapa), Canola (Brassica napus), Sorghum (Sorghum bicolor), Potato (Solanum tuberosum), Tomato (Solanum lycopersicum), Banana (Musa acuminata) and Wine grape (Vitis vinifera) as well as precomputed predictions for protein subcellular localizations using protein sequences.