Factsheet for Bra039082.1-P

Subcellular Localization

min:

: max

Winner_takes_all: mitochondrion

Predictor Summary:

plastid 2
mitochondrion 9
cytosol 1

Predictors

GFP

MS/MS

Papers

PPI

No PPI Data

Homology

Paralog

locus	Identity	Homology Identity

Ortholog

locus	Homology Species	Location	Identity	Homology Identity
PGSC0003DMT400064279	Potato	cytosol	44.89	89.38
Bra025272.1-P	Field mustard	mitochondrion	90.22	72.24
Bra033006.1-P	Field mustard	mitochondrion	88.44	70.82
Bra028469.1-P	Field mustard	cytosol	62.67	70.15
Zm00001d011333_P001	Maize	cytosol, golgi, mitochondrion	39.11	63.31
PGSC0003DMT400032862	Potato	mitochondrion	75.56	62.04
Solyc02g093680.2.1	Tomato	extracellular, mitochondrion, plastid	75.11	61.68
Zm00001d045148_P001	Maize	mitochondrion	35.56	55.94
Solyc02g092730.2.1	Tomato	cytosol, nucleus	58.22	51.57
HORVU5Hr1G057270.1	Barley	cytosol, mitochondrion, plastid	19.56	47.83
HORVU7Hr1G074890.6	Barley	mitochondrion	71.56	46.0
Os08t0120000-05	Rice	mitochondrion	70.22	45.14
OQU79812	Sorghum	mitochondrion	69.33	44.32
GSMUA_Achr10P...	Banana	cytosol, nucleus, plastid	18.67	43.75
TraesCS7A01G314000.1	Wheat	mitochondrion	71.11	43.72
TraesCS7B01G214900.1	Wheat	mitochondrion	70.67	43.44
TraesCS7D01G311200.1	Wheat	mitochondrion	70.67	43.44
VIT_14s0219g00150.t01	Wine grape	mitochondrion	75.56	42.39
Bra031877.1-P	Field mustard	mitochondrion	55.56	40.85
Zm00001d035136_P001	Maize	mitochondrion	69.33	38.42
Zm00001d049649_P001	Maize	mitochondrion	68.89	38.08
Os09t0370200-01	Rice	mitochondrion	13.78	10.92

Protein Annotations

KEGG:00020+1.3.5.1	KEGG:00190+1.3.5.1	KEGG:00650+1.3.5.1	KEGG:00720+1.3.5.1	Gene3D:1.10.1060.10	MapMan:2.3.6.1.2
InterPro:2Fe-2S_ferredoxin-like_sf	InterPro:2Fe-2S_ferredoxin-type	InterPro:2Fe2S_fd_BS	Gene3D:3.10.20.30	InterPro:4Fe4S_Fe-S-bd	InterPro:4Fe4S_Fe_S_CS
InterPro:Beta-grasp_dom_sf	EnsemblPlantsGene:Bra039082	EnsemblPlants:Bra039082.1	EnsemblPlants:Bra039082.1-P	GO:GO:0003674	GO:GO:0003824
GO:GO:0005488	GO:GO:0005575	GO:GO:0005622	GO:GO:0005623	GO:GO:0005737	GO:GO:0005739
GO:GO:0005743	GO:GO:0006091	GO:GO:0006099	GO:GO:0008150	GO:GO:0008152	GO:GO:0008177
GO:GO:0009055	GO:GO:0009987	GO:GO:0016020	GO:GO:0016491	GO:GO:0022900	GO:GO:0046872
GO:GO:0051536	GO:GO:0051537	GO:GO:0051538	GO:GO:0051539	GO:GO:0055114	InterPro:Helical_ferredxn
InterPro:IPR001041	InterPro:IPR009051	InterPro:IPR012675	InterPro:IPR017896	UniProt:M4FDB1	PFAM:PF13085
ScanProsite:PS00197	ScanProsite:PS00198	PFscan:PS51085	PFscan:PS51379	PANTHER:PTHR11921	PANTHER:PTHR11921:SF29
SUPFAM:SSF46548	SUPFAM:SSF54292	InterPro:Succ_DH/fum_Rdtase_Fe-S	InterPro:Succ_DH/fum_Rdtase_N	TIGRFAMs:TIGR00384	UniParc:UPI0002541B91
SEG:seg	:	:	:	:	:

Description

AT3G27380 (E=1e-113) SDH2-1 | SDH2-1; electron carrier/ succinate dehydrogenase

Coordinates

chrA09:-:1220244..1220921

Molecular Weight (calculated)

24780.9 Da

IEP (calculated)

8.539

GRAVY (calculated)

-0.393

Length

225 amino acids

Sequence
(BLAST)

001: MASGLIGRLV RTKPAKLTST ARLIPSRCTS SATESKPSSS GGGGRGSNLK TFQIYRWNPD SPGKPELQDY QIDLKDCGPM VLDALIKIKN EMDPSLTFRR
101: SCREGICGSC AMNIDGCNGL ACLTKIEDGA KETTITPLPH MFVIKDLVVD MTNFYNQYKS IEPWLKRKSP ASEPGKEILQ SKKDRAKLDG MYECILCACC
201: STSCPSYWWN PESYLGPAAL LHANR

Best Arabidopsis Sequence Match ( AT3G27380.2 )
(BLAST)

001: MASGLIGRLV GTKPSKLATA ARLIPARWTS TGAEAETKAS SGGGRGSNLK TFQIYRWNPD NPGKPELQNY QIDLKDCGPM VLDALIKIKN EMDPSLTFRR
101: SCREGICGSC AMNIDGCNGL ACLTKIQDEA SETTITPLPH MFVIKDLVVD MTNFYNQYKS IEPWLKRKTP ASVPAKEILQ SKKDRAKLDG MYECILCACC
201: STSCPSYWWN PESYLGPAAL LHANRWISDS RDEYTKERLE AIDDEFKLYR CHTILNCARA CPKGLNPGKQ ITHIKQLQR

Arabidopsis Description

SDH2-1Succinate dehydrogenase [ubiquinone] iron-sulfur subunit 1, mitochondrial [Source:UniProtKB/Swiss-Prot;Acc:Q8LBZ7]
SUBAcon: [mitochondrion]

Hydropathy Plot

About CropPAL

The Protein Annotated Locations Database (CropPAL) houses large scale proteomic and GFP localization data from published experimental studies in Soybean (Glycine max), Maize (Zea mays), Wheat (Triticum aestivum), Barley (Hordeum vulgare), Rice (Oryza sativa), Field mustard (Brassica rapa), Canola (Brassica napus), Sorghum (Sorghum bicolor), Potato (Solanum tuberosum), Tomato (Solanum lycopersicum), Banana (Musa acuminata) and Wine grape (Vitis vinifera) as well as precomputed predictions for protein subcellular localizations using protein sequences.