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Field mustard
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Field mustard
Subcellular Localization
min:
: max

 
Winner_takes_all: cytosol

Predictor Summary:
  • plastid 1
  • mitochondrion 3
  • cytosol 4
Predictors GFP MS/MS Papers
Winner Takes All:cytosol
Any Predictor:cytosol, mitochondrion, plastid
BaCelLo:plastid
EpiLoc:mitochondrion
MultiLoc:cytosol
Plant-mPloc:cytosol, mitochondrion
PProwler:mitochondrion
WoLF PSORT:cytosol
YLoc:cytosol
PPI
No PPI Data
Homology

Paralog

locusIdentityHomology Identity

Ortholog

locusHomology SpeciesLocationIdentityHomology Identity
PGSC0003DMT400064279 Potato cytosol 51.24 91.15
KRH07075 Soybean cytosol 85.57 73.5
AT5G40650.1 Thale cress mitochondrion 97.01 69.64
AT3G27380.1 Thale cress mitochondrion 95.02 68.46
Bra025272.1-P Field mustard mitochondrion 95.02 67.97
Solyc02g092730.2.1 Tomato cytosol, nucleus 84.58 66.93
Zm00001d011333_P001 Maize cytosol, golgi, mitochondrion 46.27 66.91
KRG94380 Soybean mitochondrion 92.04 66.79
Bra033006.1-P Field mustard mitochondrion 93.03 66.55
Solyc02g093680.2.1 Tomato extracellular, mitochondrion, plastid 88.06 64.6
PGSC0003DMT400032862 Potato mitochondrion 87.56 64.23
Bra039082.1-P Field mustard mitochondrion 70.15 62.67
VIT_14s0219g00150.t01 Wine grape mitochondrion 89.05 44.64
Bra031877.1-P Field mustard mitochondrion 67.66 44.44
Zm00001d035136_P001 Maize mitochondrion 83.08 41.13
Zm00001d049649_P001 Maize mitochondrion 81.59 40.29
HORVU7Hr1G074890.6 Barley mitochondrion 69.65 40.0
Os08t0120000-05 Rice mitochondrion 67.16 38.57
OQU79812 Sorghum mitochondrion 66.67 38.07
TraesCS7A01G314000.1 Wheat mitochondrion 69.15 37.98
TraesCS7B01G214900.1 Wheat mitochondrion 68.66 37.7
TraesCS7D01G311200.1 Wheat mitochondrion 68.66 37.7
HORVU5Hr1G057270.1 Barley cytosol, mitochondrion, plastid 15.92 34.78
Zm00001d045148_P001 Maize mitochondrion 23.38 32.87
Os09t0370200-01 Rice mitochondrion 13.93 9.86
Protein Annotations
KEGG:00020+1.3.5.1KEGG:00190+1.3.5.1KEGG:00650+1.3.5.1KEGG:00720+1.3.5.1Gene3D:1.10.1060.10MapMan:2.3.6.1.2
InterPro:2Fe-2S_ferredoxin-like_sfInterPro:2Fe-2S_ferredoxin-typeInterPro:2Fe2S_fd_BSGene3D:3.10.20.30InterPro:4Fe4S_Fe-S-bdInterPro:4Fe4S_Fe_S_CS
InterPro:Beta-grasp_dom_sfEnsemblPlantsGene:Bra028469EnsemblPlants:Bra028469.1EnsemblPlants:Bra028469.1-Pncoils:CoilGO:GO:0003674
GO:GO:0003824GO:GO:0005488GO:GO:0005575GO:GO:0005622GO:GO:0005623GO:GO:0005737
GO:GO:0005739GO:GO:0005743GO:GO:0006091GO:GO:0006099GO:GO:0008150GO:GO:0008152
GO:GO:0008177GO:GO:0009055GO:GO:0009987GO:GO:0016020GO:GO:0016491GO:GO:0022900
GO:GO:0046872GO:GO:0051536GO:GO:0051537GO:GO:0051538GO:GO:0051539GO:GO:0055114
InterPro:Helical_ferredxnInterPro:IPR001041InterPro:IPR009051InterPro:IPR012675InterPro:IPR017896UniProt:M4EI54
PFAM:PF13085PFAM:PF13534ScanProsite:PS00197ScanProsite:PS00198PFscan:PS51085PFscan:PS51379
PANTHER:PTHR11921SUPFAM:SSF46548SUPFAM:SSF54292InterPro:Succ_DH/fum_Rdtase_Fe-SInterPro:Succ_DH/fum_Rdtase_NTIGRFAMs:TIGR00384
UniParc:UPI0002543321:::::
Description
AT5G40650 (E=3e-115) SDH2-2 | SDH2-2; electron carrier/ succinate dehydrogenase
Coordinates
chrA02:+:519514..520350
Molecular Weight (calculated)
22761.6 Da
IEP (calculated)
8.365
GRAVY (calculated)
-0.369
Length
201 amino acids
Sequence
(BLAST)
001: MVLDALIKIK NEMDPSLTFR RSCREGICGS CAMNIDGCNG LACLTKIESE SSKETTITPL PHMFVIKDLV VDMTNFYNQY KSIEPWLKRK TPASVPGKEI
101: LQSKKDRAKL DGMYECILCA CCSTSCPSYW WNPESYLGPA ALLHANRWIS DSRDGYTKER LEAINDEFKL YRCHTILNCA RACPKGLNPG KQISHIKQLQ
201: K
Best Arabidopsis Sequence Match ( AT5G40650.1 )
(BLAST)
001: MAFGLIGRVV GTKSSRLSTA ARLIPARWTS TGSEAQSKAS TGGGGASLKT FQIYRWNPDN PGKPELQDYK IDLKDCGPMV LDALIKIKNE MDPSLTFRRS
101: CREGICGSCA MNIDGCNGLA CLTKIESGSK ETTITPLPHM FVIKDLVVDM TNFYNQYKSI EPWLKRKNPA SVPGKEILQS KKDRAKLDGM YECILCACCS
201: TSCPSYWWNP ESYLGPAALL HANRWISDSR DEYTKERLEA IDDEFKLYRC HTILNCARAC PKGLNPGKQI THIKQLQKSG
Arabidopsis Description
SDH2-2Succinate dehydrogenase [ubiquinone] iron-sulfur subunit 2, mitochondrial [Source:UniProtKB/Swiss-Prot;Acc:Q8LB02]
SUBAcon: [mitochondrion]
Hydropathy Plot

About CropPAL

The Protein Annotated Locations Database (CropPAL) houses large scale proteomic and GFP localization data from published experimental studies in Soybean (Glycine max), Maize (Zea mays), Wheat (Triticum aestivum), Barley (Hordeum vulgare), Rice (Oryza sativa), Field mustard (Brassica rapa), Canola (Brassica napus), Sorghum (Sorghum bicolor), Potato (Solanum tuberosum), Tomato (Solanum lycopersicum), Banana (Musa acuminata) and Wine grape (Vitis vinifera) as well as precomputed predictions for protein subcellular localizations using protein sequences.