Factsheet for HORVU7Hr1G074890.6

Subcellular Localization

min:

: max

Winner_takes_all: mitochondrion

Predictor Summary:

plastid 2
mitochondrion 9
cytosol 1

Predictors

GFP

MS/MS

Papers

PPI

No PPI Data

Homology

Paralog

locus	Identity	Homology Identity

Ortholog

locus	Homology Species	Location	Identity	Homology Identity
TraesCS7B01G214900.1	Wheat	mitochondrion	98.29	93.99
TraesCS7D01G311200.1	Wheat	mitochondrion	98.0	93.72
TraesCS7A01G314000.1	Wheat	mitochondrion	98.0	93.72
Os08t0120000-05	Rice	mitochondrion	90.57	90.57
OQU79812	Sorghum	mitochondrion	90.29	89.77
PGSC0003DMT400064279	Potato	cytosol	27.71	85.84
Zm00001d045148_P001	Maize	mitochondrion	33.14	81.12
Bra039082.1-P	Field mustard	mitochondrion	46.0	71.56
Bra028469.1-P	Field mustard	cytosol	40.0	69.65
PGSC0003DMT400032862	Potato	mitochondrion	49.14	62.77
Solyc02g093680.2.1	Tomato	extracellular, mitochondrion, plastid	48.86	62.41
AT5G40650.1	Thale cress	mitochondrion	48.57	60.71
Bra033006.1-P	Field mustard	mitochondrion	48.57	60.5
Bra025272.1-P	Field mustard	mitochondrion	48.57	60.5
AT3G27380.1	Thale cress	mitochondrion	47.71	59.86
CDX67469	Canola	mitochondrion	18.57	57.02
Solyc02g092730.2.1	Tomato	cytosol, nucleus	38.57	53.15
CDX67470	Canola	cytosol, endoplasmic reticulum, extracellular, golgi, mitochondrion, plasma membrane, plastid, vacuole	12.86	50.56
CDY11704	Canola	cytosol	8.86	47.69
KRH33590	Soybean	cytosol	23.43	47.67
HORVU5Hr1G058190.1	Barley	mitochondrion	39.14	44.63
HORVU5Hr1G057270.1	Barley	cytosol, mitochondrion, plastid	11.71	44.57
VIT_14s0219g00150.t01	Wine grape	mitochondrion	48.86	42.64
GSMUA_Achr7P02810_001	Banana	extracellular, vacuole	8.29	19.08

Protein Annotations

KEGG:00020+1.3.5.1	KEGG:00190+1.3.5.1	KEGG:00650+1.3.5.1	KEGG:00720+1.3.5.1	Gene3D:1.10.1060.10	MapMan:17.7.1.2.12
MapMan:2.3.6.1.2	InterPro:2Fe-2S_ferredoxin-like_sf	InterPro:2Fe-2S_ferredoxin-type	InterPro:2Fe2S_fd_BS	Gene3D:3.10.20.30	Gene3D:4.10.830.10
InterPro:4Fe4S_Fe-S-bd	InterPro:4Fe4S_Fe_S_CS	InterPro:Beta-grasp_dom_sf	GO:GO:0003674	GO:GO:0003735	GO:GO:0003824
GO:GO:0005198	GO:GO:0005488	GO:GO:0005575	GO:GO:0005622	GO:GO:0005623	GO:GO:0005737
GO:GO:0005739	GO:GO:0005743	GO:GO:0005840	GO:GO:0006091	GO:GO:0006099	GO:GO:0006412
GO:GO:0008150	GO:GO:0008152	GO:GO:0008177	GO:GO:0009055	GO:GO:0009058	GO:GO:0009987
GO:GO:0016020	GO:GO:0016491	GO:GO:0019538	GO:GO:0022900	GO:GO:0046872	GO:GO:0051536
GO:GO:0051537	GO:GO:0051538	GO:GO:0051539	GO:GO:0055114	EnsemblPlantsGene:HORVU7Hr1G074890	EnsemblPlants:HORVU7Hr1G074890.6
InterPro:Helical_ferredxn	InterPro:IPR001041	InterPro:IPR009051	InterPro:IPR012675	InterPro:IPR017896	UniProt:M0Y6W8
PFAM:PF00253	PFAM:PF13085	ScanProsite:PS00197	ScanProsite:PS00198	ScanProsite:PS00527	PFscan:PS51085
PFscan:PS51379	PANTHER:PTHR11921	PANTHER:PTHR11921:SF29	InterPro:Ribosomal_S14	InterPro:Ribosomal_S14_CS	SUPFAM:SSF46548
SUPFAM:SSF54292	SUPFAM:SSF57716	InterPro:Succ_DH/fum_Rdtase_Fe-S	InterPro:Succ_DH/fum_Rdtase_N	TIGRFAMs:TIGR00384	UniParc:UPI000296A64B
SEG:seg	:	:	:	:	:

Description

Succinate dehydrogenase [ubiquinone] iron-sulfur subunit, mitochondrial [Source:UniProtKB/TrEMBL;Acc:M0Y6W8]

Coordinates

chrchr7H:-:430904736..430907011

Molecular Weight (calculated)

39305.8 Da

IEP (calculated)

10.341

GRAVY (calculated)

-0.493

Length

350 amino acids

Sequence
(BLAST)

001: MAAAALLRRS PAARALLSPA LSSRLVASKP HSSSPAPPPP SSKPASTKTF SIYRWDPDSP STKPHLKDYK VDLSDCGPMV LDALLKIKNE QDPSLTFRRS
101: CREGICGSCA MNIDGDNGLA CLTKISSEAA GASTISPLPH MFVVKDLVVD MTNFYNQYKS VEPWLKRKDP ASAGGKEIYQ SKADRAKLDG MYECILCACC
201: STSCPSYWWN PEEYLGPAAL LHANRLPLWG TLMKPKPSMF MHVQARGYHG VSEKRNMRDH KRRLLAAKYE LRGKLYKSVC RDPDLPSDMR DKFRYKLSKL
301: PRNSNMTRLR NRCIFTGRSR GVYQKFRMSR IVFRTLANKG ELMGVKKASW

Best Arabidopsis Sequence Match ( AT5G40650.2 )
(BLAST)

001: MAFGLIGRVV GTKSSRLSTA ARLIPARWTS TGSEAQSKAS TGGGGASLKT FQIYRWNPDN PGKPELQDYK IDLKDCGPMV LDALIKIKNE MDPSLTFRRS
101: CREGICGSCA MNIDGCNGLA CLTKIESGSK ETTITPLPHM FVIKDLVVDM TNFYNQYKSI EPWLKRKNPA SVPGKEILQS KKDRAKLDGM YECILCACCS
201: TSCPSYWWNP ESYLGPAALL HANR

Arabidopsis Description

SDH2-2Succinate dehydrogenase [ubiquinone] iron-sulfur subunit 2, mitochondrial [Source:UniProtKB/Swiss-Prot;Acc:Q8LB02]
SUBAcon: [mitochondrion]

Hydropathy Plot

About CropPAL

The Protein Annotated Locations Database (CropPAL) houses large scale proteomic and GFP localization data from published experimental studies in Soybean (Glycine max), Maize (Zea mays), Wheat (Triticum aestivum), Barley (Hordeum vulgare), Rice (Oryza sativa), Field mustard (Brassica rapa), Canola (Brassica napus), Sorghum (Sorghum bicolor), Potato (Solanum tuberosum), Tomato (Solanum lycopersicum), Banana (Musa acuminata) and Wine grape (Vitis vinifera) as well as precomputed predictions for protein subcellular localizations using protein sequences.