CropPAL

Subcellular Localization

min:

: max

Winner_takes_all: mitochondrion

Predictor Summary:

plastid 2
mitochondrion 9

Predictors

GFP

MS/MS

Papers

nucleus: 21132161
mitochondrion: 27780359
endoplasmic reticulum: 28499913

msms PMID: 21132161 doi

B Cooper, KB Campbell, J Feng, WM Garrett, R Frederick

Soybean Genomics and Improvement Laboratory, USDA-ARS, Beltsville, MD 20705, USA. bret.cooper@ars.usda.gov

msms PMID: 27780359 doi

G Mustafa, S Komatsu

Graduate School of Life and Environmental Science, University of Tsukuba , Tsukuba 305-8572, Japan., National Institute of Crop Science, National Agriculture and Food Research Organization , Tsukuba 305-8518, Japan.

msms PMID: 28499913 doi

S Komatsu, X Wang, X Yin, Y Nanjo, H Ohyanagi, K Sakata

Department of Life Science and Informatics, Maebashi Institute of Technology, Maebashi 371-0816, Japan. Electronic address: ksakata@maebashi-it.ac.jp., Institute of Crop Science, National Agriculture and Food Research Organization, Tsukuba 305-8518, Japan., Institute of Crop Science, National Agriculture and Food Research Organization, Tsukuba 305-8518, Japan; Faculty of Life and Environmental Sciences, University of Tsukuba, Tsukuba 305-8572, Japan., Institute of Crop Science, National Agriculture and Food Research Organization, Tsukuba 305-8518, Japan; Faculty of Life and Environmental Sciences, University of Tsukuba, Tsukuba 305-8572, Japan. Electronic address: komatsu.setsuko.fu@u.tsukuba.ac.jp., King Abdullah University of Science and Technology (KAUST), Computational Bioscience Research Center (CBRC), Thuwal 23955-6900, Saudi Arabia.

PPI

Inferred distinct locusB in Crop

locusB	locations
KRG89352
KRG94380
KRH05703
KRH07075
KRH15341
KRH25379
KRH56129

Inferred from Arabidopsis experimental PPI

Ath locusA	locusB	Ath locusB	Paper
AT5G66760.1	KRG89352	AT1G08480.1	12970493
AT5G66760.1	KRH05703	AT1G47420.1	12970493
AT5G66760.1	KRH15341	AT1G47420.1	12970493
AT5G66760.1	KRG94380	AT3G27380.1	12970493
AT5G66760.1	KRH07075	AT3G27380.1	12970493
AT5G66760.1	KRH25379	AT4G32210.1	12970493
AT5G66760.1	KRH56129	AT4G32210.1	12970493
AT5G66760.1	KRH25379	AT5G09600.1	12970493
AT5G66760.1	KRH56129	AT5G09600.1	12970493
AT5G66760.1	KRG94380	AT5G40650.1	12970493
AT5G66760.1	KRH07075	AT5G40650.1	12970493

Homology

Paralog

locus	Identity	Homology Identity

Ortholog

locus	Homology Species	Location	Identity	Homology Identity
KRH76805	Soybean	mitochondrion	98.57	98.57
GSMUA_Achr7P00810_001	Banana	cytosol	86.98	91.49
KRH69929	Soybean	mitochondrion	91.9	91.32
PGSC0003DMT400038576	Potato	mitochondrion	89.68	89.68
Solyc02g085350.2.1	Tomato	mitochondrion	89.37	89.51
EER90804	Sorghum	mitochondrion	87.62	89.03
KXG34367	Sorghum	mitochondrion	87.3	88.85
CDY57124	Canola	mitochondrion	88.41	88.84
Zm00001d007966_P001	Maize	mitochondrion	87.14	88.69
Bra012100.1-P	Field mustard	mitochondrion	87.78	88.62
CDX81369	Canola	mitochondrion	88.25	88.53
CDY30754	Canola	mitochondrion	88.1	88.52
CDY53847	Canola	mitochondrion	88.1	88.52
HORVU0Hr1G013850.1	Barley	cytosol	76.83	88.32
CDY49839	Canola	mitochondrion	87.94	88.22
AT5G66760.1	Thale cress	mitochondrion	88.73	88.17
TraesCS2A01G255100.1	Wheat	plastid	86.51	88.05
TraesCS2D01G255500.1	Wheat	mitochondrion, plastid	86.35	87.88
Os07t0134800-01	Rice	mitochondrion	87.3	87.3
TraesCS5B01G414900.1	Wheat	mitochondrion, plastid	85.56	86.8
TraesCS2B01G267100.1	Wheat	mitochondrion	78.57	86.69
TraesCS5A01G411200.1	Wheat	golgi, mitochondrion	85.24	86.47
TraesCS5D01G420100.1	Wheat	mitochondrion	80.95	86.29
HORVU2Hr1G061040.10	Barley	mitochondrion	72.06	85.82
Bra024466.1-P	Field mustard	mitochondrion	85.24	84.97
CDY29234	Canola	mitochondrion	84.92	84.52
AT2G18450.1	Thale cress	mitochondrion	84.76	84.49
CDY36482	Canola	mitochondrion	84.6	84.2
Zm00001d008855_P001	Maize	cytosol, mitochondrion, peroxisome	30.16	84.07
VIT_04s0023g01650.t01	Wine grape	mitochondrion	88.89	83.58
Zm00001d018758_P001	Maize	mitochondrion	79.05	79.94
Zm00001d029250_P001	Maize	cytosol	8.89	75.68
Zm00001d014927_P001	Maize	cytosol, mitochondrion, peroxisome	15.24	75.0
KRH75678	Soybean	plastid	14.6	57.14
Zm00001d038502_P001	Maize	cytosol	17.78	51.38
Zm00001d025385_P001	Maize	cytosol	9.52	46.15
Zm00001d029316_P001	Maize	cytosol	12.22	39.9
KRH56611	Soybean	plastid	28.41	27.67

Protein Annotations

KEGG:00020+1.3.5.1	KEGG:00190+1.3.5.1	KEGG:00650+1.3.5.1	KEGG:00720+1.3.5.1	Gene3D:1.20.58.100	EntrezGene:100818379
MapMan:2.3.6.1.1	Gene3D:3.50.50.60	Gene3D:3.90.700.10	Gene3D:4.10.80.40	EMBL:ACUP02006760	InterPro:FAD-binding_2
InterPro:FAD/NAD-bd_sf	InterPro:FRD_SDH_FAD_BS	InterPro:Fum_R/Succ_DH_flav-like_C_sf	InterPro:Fum_Rdtase/Succ_DH_flav-like_C	EnsemblPlantsGene:GLYMA_11G067800	GO:GO:0000104
GO:GO:0000166	GO:GO:0003674	GO:GO:0003824	GO:GO:0005488	GO:GO:0005575	GO:GO:0005622
GO:GO:0005623	GO:GO:0005737	GO:GO:0005739	GO:GO:0005743	GO:GO:0005749	GO:GO:0006091
GO:GO:0006099	GO:GO:0006121	GO:GO:0006139	GO:GO:0008150	GO:GO:0008152	GO:GO:0008177
GO:GO:0009055	GO:GO:0009061	GO:GO:0009987	GO:GO:0016020	GO:GO:0016491	GO:GO:0016627
GO:GO:0022900	GO:GO:0050660	GO:GO:0055114	UniProt:I1LHR7	InterPro:IPR027477	InterPro:IPR036188
EnsemblPlants:KRH28665	ProteinID:KRH28665	ProteinID:KRH28665.1	PFAM:PF00890	PFAM:PF02910	PIRSF:PIRSF000171
ScanProsite:PS00504	PANTHER:PTHR11632	PANTHER:PTHR11632:SF51	MetaCyc:PWY-3781	MetaCyc:PWY-4302	MetaCyc:PWY-561
MetaCyc:PWY-5690	MetaCyc:PWY-6728	MetaCyc:PWY-6969	MetaCyc:PWY-7254	MetaCyc:PWY-7279	SUPFAM:SSF46977
SUPFAM:SSF51905	SUPFAM:SSF56425	InterPro:Succ_DH/fumarate_Rdtase_cat_sf	InterPro:Succ_DH_flav_su_fwd	InterPro:Succ_Dhase_FrdA_Gneg	TIGRFAMs:TIGR01812
TIGRFAMs:TIGR01816	UniParc:UPI000233D55C	SEG:seg	:	:	:

Description

hypothetical protein

Coordinates

chr11:+:5093882..5100937

Molecular Weight (calculated)

69159.9 Da

IEP (calculated)

6.706

GRAVY (calculated)

-0.320

Length

630 amino acids

Sequence
(BLAST)

001: MWRCIARGLR GPASTRSTSN HSLGSQLSRF FSSGANSSYT VVDHTYDAVV VGAGGAGLRA AIGLSEHGFN TACITKLFPT RSHTVAAQGG INAALGNMTE
101: DDWRWHMYDT VKGSDWLGDQ DAIQYMCREA PKAVIELENY GLPFSRTEDG KIYQRAFGGQ SLNYGKGGQA YRCACAADRT GHALLHTLYG QAMRHNTQFF
201: VEYFALDLVM NSDGTCQGVI ALNMEDGTLH RFKAASTILA TGGYGRAYFS ATSAHTCTGD GNAMVARAGI PLEDLEFVQF HPTGIYGAGC LITEGSRGEG
301: GILRNSEGER FMERYAPTAK DLASRDVVSR AMTMEIREGR GVGPLKDHIY LHLNHLPPDV LKERLPGISE TAAIFAGVDV TKEPIPVLPT VHYNMGGIPT
401: NHYGEVVTIK GDNPDAVVPG LMAAGETACA SVHGANRLGA NSLLDIVVFG RACANRVAEI RRPGEKQKPL EKDAGQRTIA WLDKLRNSNG SLPTSQIRLN
501: MQRVMQTNAA VFRTQETLEE GCQLIDKTWE SFHDVQVKDR SLIWNSDLIE TIELENLLIN ACITMYSAEA RKESRGAHAR EDFKVRDDGS WMKHTVGFWE
601: NEKVRLDYRP VHLNVLDDEV ESFPPKARVY

Best Arabidopsis Sequence Match ( AT5G66760.1 )
(BLAST)

001: MWRCVSRGFR APASKTSSLF DGVSGSRFSR FFSTGSTDTR SSYTIVDHTY DAVVVGAGGA GLRAAIGLSE HGFNTACITK LFPTRSHTVA AQGGINAALG
101: NMSEDDWRWH MYDTVKGSDW LGDQDAIQYM CREAPKAVIE LENYGLPFSR TEEGKIYQRA FGGQSLDFGK GGQAYRCACA ADRTGHALLH TLYGQAMKHN
201: TQFFVEYFAL DLLMASDGSC QGVIALNMED GTLHRFRSSQ TILATGGYGR AYFSATSAHT CTGDGNAMVA RAGLPLQDLE FVQFHPTGIY GAGCLITEGS
301: RGEGGILRNS EGERFMERYA PTAKDLASRD VVSRSMTMEI REGRGVGPHK DHIYLHLNHL PPEVLKERLP GISETAAIFA GVDVTKEPIP VLPTVHYNMG
401: GIPTNYHGEV VTIKGDDPDA VIPGLMAAGE AACASVHGAN RLGANSLLDI VVFGRACANR VAEISKPGEK QKPLEKDAGE KTIAWLDRLR NSNGSLPTST
501: IRLNMQRIMQ NNAAVFRTQE TLEEGCQLID KAWESFGDVQ VKDRSMIWNS DLIETLELEN LLINASITMH SAEARKESRG AHAREDFTKR EDGEWMKHTL
601: GYWEDEKVRL DYRPVHMDTL DDEIDTFPPK ARVY

Arabidopsis Description

SDH1-1Succinate dehydrogenase [ubiquinone] flavoprotein subunit, mitochondrial [Source:UniProtKB/TrEMBL;Acc:A0A178UAN3]
SUBAcon: [mitochondrion]

Hydropathy Plot

About CropPAL

The Protein Annotated Locations Database (CropPAL) houses large scale proteomic and GFP localization data from published experimental studies in Soybean (Glycine max), Maize (Zea mays), Wheat (Triticum aestivum), Barley (Hordeum vulgare), Rice (Oryza sativa), Field mustard (Brassica rapa), Canola (Brassica napus), Sorghum (Sorghum bicolor), Potato (Solanum tuberosum), Tomato (Solanum lycopersicum), Banana (Musa acuminata) and Wine grape (Vitis vinifera) as well as precomputed predictions for protein subcellular localizations using protein sequences.