Factsheet for Zm00001d018758_P001

Subcellular Localization

min:

: max

Winner_takes_all: mitochondrion

Predictor Summary:

mitochondrion 6
plastid 1

Predictors

GFP

MS/MS

Papers

Winner Takes All:	mitochondrion
Any Predictor:	mitochondrion
iPSORT:	mitochondrion
MultiLoc:	mitochondrion
Predotar:	mitochondrion
PProwler:	mitochondrion
TargetP:	mitochondrion
WoLF PSORT:	plastid
YLoc:	mitochondrion

PPI

Inferred distinct locusB in Crop

locusB	locations
Zm00001d011333_P001
Zm00001d013526_P002
Zm00001d033554_P001
Zm00001d035054_P002
Zm00001d035136_P001
Zm00001d045148_P001
Zm00001d049649_P001
Zm00001d049691_P002

Inferred from Arabidopsis experimental PPI

Ath locusA	locusB	Ath locusB	Paper
AT5G66760.1	Zm00001d035054_P002	AT1G08480.1	12970493
AT5G66760.1	Zm00001d049691_P002	AT1G08480.1	12970493
AT5G66760.1	Zm00001d013526_P002	AT1G47420.1	12970493
AT5G66760.1	Zm00001d033554_P001	AT1G47420.1	12970493
AT5G66760.1	Zm00001d011333_P001	AT3G27380.1	12970493
AT5G66760.1	Zm00001d035136_P001	AT3G27380.1	12970493
AT5G66760.1	Zm00001d045148_P001	AT3G27380.1	12970493
AT5G66760.1	Zm00001d049649_P001	AT3G27380.1	12970493
AT5G66760.1	Zm00001d011333_P001	AT5G40650.1	12970493
AT5G66760.1	Zm00001d035136_P001	AT5G40650.1	12970493
AT5G66760.1	Zm00001d045148_P001	AT5G40650.1	12970493
AT5G66760.1	Zm00001d049649_P001	AT5G40650.1	12970493

Homology

Paralog

locus	Identity	Homology Identity

Ortholog

locus	Homology Species	Location	Identity	Homology Identity
Zm00001d007966_P001	Maize	mitochondrion	89.57	90.15
TraesCS5D01G420100.1	Wheat	mitochondrion	83.79	88.32
GSMUA_Achr7P00810_001	Banana	cytosol	81.86	85.14
TraesCS5B01G414900.1	Wheat	mitochondrion, plastid	83.95	84.22
TraesCS5A01G411200.1	Wheat	golgi, mitochondrion	83.95	84.22
Os07t0134800-01	Rice	mitochondrion	85.07	84.13
HORVU0Hr1G013850.1	Barley	cytosol	73.35	83.39
Solyc02g085350.2.1	Tomato	mitochondrion	81.38	80.6
PGSC0003DMT400038576	Potato	mitochondrion	81.38	80.48
CDY57124	Canola	mitochondrion	80.1	79.59
KRH69929	Soybean	mitochondrion	80.74	79.34
Bra012100.1-P	Field mustard	mitochondrion	79.45	79.33
CDX81369	Canola	mitochondrion	79.94	79.3
CDY53847	Canola	mitochondrion	79.78	79.27
CDY30754	Canola	mitochondrion	79.78	79.27
AT5G66760.1	Thale cress	mitochondrion	80.58	79.18
CDY49839	Canola	mitochondrion	79.78	79.14
KRH76805	Soybean	mitochondrion	79.94	79.05
KRH28665	Soybean	mitochondrion	79.94	79.05
Zm00001d008855_P001	Maize	cytosol, mitochondrion, peroxisome	28.25	77.88
Zm00001d014927_P001	Maize	cytosol, mitochondrion, peroxisome	15.89	77.34
Zm00001d029250_P001	Maize	cytosol	9.15	77.03
Bra024466.1-P	Field mustard	mitochondrion	78.01	76.9
CDY36482	Canola	mitochondrion	77.69	76.46
CDY29234	Canola	mitochondrion	77.69	76.46
AT2G18450.1	Thale cress	mitochondrion	76.56	75.47
VIT_04s0023g01650.t01	Wine grape	mitochondrion	80.9	75.22
Zm00001d038502_P001	Maize	cytosol	18.62	53.21
Zm00001d029316_P001	Maize	cytosol	12.36	39.9
Zm00001d025385_P001	Maize	cytosol	7.54	36.15
Zm00001d015183_P002	Maize	plastid	25.84	24.1

Protein Annotations

Gene3D:1.20.58.100	EntrezGene:100279930	MapMan:2.3.6.1.1	Gene3D:3.50.50.60	Gene3D:3.90.700.10	Gene3D:4.10.80.40
UniProt:A0A1D6HRY4	InterPro:FAD-binding_2	InterPro:FAD/NAD-bd_sf	InterPro:FRD_SDH_FAD_BS	InterPro:Fum_R/Succ_DH_flav-like_C_sf	InterPro:Fum_Rdtase/Succ_DH_flav-like_C
GO:GO:0003674	GO:GO:0003824	GO:GO:0008150	GO:GO:0008152	GO:GO:0016491	GO:GO:0055114
InterPro:IPR027477	InterPro:IPR036188	ProteinID:ONM51241.1	PFAM:PF00890	PFAM:PF02910	PIRSF:PIRSF000171
ScanProsite:PS00504	PANTHER:PTHR11632	PANTHER:PTHR11632:SF51	SUPFAM:SSF46977	SUPFAM:SSF51905	SUPFAM:SSF56425
InterPro:Succ_DH/fumarate_Rdtase_cat_sf	UniParc:UPI00084510F2	EnsemblPlantsGene:Zm00001d018758	EnsemblPlants:Zm00001d018758_P001	EnsemblPlants:Zm00001d018758_T001	SEG:seg

Description

succinate dehydrogenase1 succinate dehydrogenase1

Coordinates

chr7:+:4402578..4407412

Molecular Weight (calculated)

69059.4 Da

IEP (calculated)

6.508

GRAVY (calculated)

-0.270

Length

623 amino acids

Sequence
(BLAST)

001: MWRSCVSRGL SRAKASASRL LSTASSSYTV VDHTYDAVVV GAGGAGLRAA IGLSEHGFNT ACITKLFPTR SHTVAAQGGI NAALGNMSED DWRWHMYDTV
101: KGSDWLGDQD SIQYMCREAP KAVIELENYG LPFSRTEEGK IYQRAFGGQS LDFGKGGQAY RCACAADRTG HAMLHTLYGQ AMKHNTQFFV EYFALDLLMD
201: NEGKCQGIIA LNMEDGTLHR FRASNTILAT GVRSLSILAV MAGHISQQPQ HTLVLEMAML WLHVLVYLSR PVFSSRVSLL VFGPCSCPHH AYLQLQDLEF
301: VQFHPTGIYG AGCLITEGSR GEGGILRNSE GERFMERYAP TAKDLASRDV VSRSMTMEIR EGRGVGPLKD HIYLHLNHLP PEVLKERLPG ISETAAIFAG
401: VDVTKEPIPV LPTVHYNMGG IPTNYHGEVV DIKGDNPDAV VPGLMAAGEA ACASVHGEKQ KPLEKDAGEK TIAWLDKLRN ANGSLPTSKI RLNMQRVMQN
501: NAAVFRTQET LEEGCELISK TWESFHDVKL SDQSLIWNSD LIETLELENL LINACITMYS AEARKESRGA HAREDFTTRD DEKWMKHSLG YWENEKVRLA
601: YRPVHMNTLD DEVESFPPKA RVY

Best Arabidopsis Sequence Match ( AT5G66760.1 )
(BLAST)

001: MWRCVSRGFR APASKTSSLF DGVSGSRFSR FFSTGSTDTR SSYTIVDHTY DAVVVGAGGA GLRAAIGLSE HGFNTACITK LFPTRSHTVA AQGGINAALG
101: NMSEDDWRWH MYDTVKGSDW LGDQDAIQYM CREAPKAVIE LENYGLPFSR TEEGKIYQRA FGGQSLDFGK GGQAYRCACA ADRTGHALLH TLYGQAMKHN
201: TQFFVEYFAL DLLMASDGSC QGVIALNMED GTLHRFRSSQ TILATGGYGR AYFSATSAHT CTGDGNAMVA RAGLPLQDLE FVQFHPTGIY GAGCLITEGS
301: RGEGGILRNS EGERFMERYA PTAKDLASRD VVSRSMTMEI REGRGVGPHK DHIYLHLNHL PPEVLKERLP GISETAAIFA GVDVTKEPIP VLPTVHYNMG
401: GIPTNYHGEV VTIKGDDPDA VIPGLMAAGE AACASVHGAN RLGANSLLDI VVFGRACANR VAEISKPGEK QKPLEKDAGE KTIAWLDRLR NSNGSLPTST
501: IRLNMQRIMQ NNAAVFRTQE TLEEGCQLID KAWESFGDVQ VKDRSMIWNS DLIETLELEN LLINASITMH SAEARKESRG AHAREDFTKR EDGEWMKHTL
601: GYWEDEKVRL DYRPVHMDTL DDEIDTFPPK ARVY

Arabidopsis Description

SDH1-1Succinate dehydrogenase [ubiquinone] flavoprotein subunit, mitochondrial [Source:UniProtKB/TrEMBL;Acc:A0A178UAN3]
SUBAcon: [mitochondrion]

Hydropathy Plot

About CropPAL

The Protein Annotated Locations Database (CropPAL) houses large scale proteomic and GFP localization data from published experimental studies in Soybean (Glycine max), Maize (Zea mays), Wheat (Triticum aestivum), Barley (Hordeum vulgare), Rice (Oryza sativa), Field mustard (Brassica rapa), Canola (Brassica napus), Sorghum (Sorghum bicolor), Potato (Solanum tuberosum), Tomato (Solanum lycopersicum), Banana (Musa acuminata) and Wine grape (Vitis vinifera) as well as precomputed predictions for protein subcellular localizations using protein sequences.